Resource-aware construct design in mammalian cells
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DOI: 10.1038/s41467-023-39252-4
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- Timothy Frei & Federica Cella & Fabiana Tedeschi & Joaquín Gutiérrez & Guy-Bart Stan & Mustafa Khammash & Velia Siciliano, 2020. "Characterization and mitigation of gene expression burden in mammalian cells," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
- Cédric Orelle & Erik D. Carlson & Teresa Szal & Tanja Florin & Michael C. Jewett & Alexander S. Mankin, 2015. "Protein synthesis by ribosomes with tethered subunits," Nature, Nature, vol. 524(7563), pages 119-124, August.
- Chenrui Qin & Yanhui Xiang & Jie Liu & Ruilin Zhang & Ziming Liu & Tingting Li & Zhi Sun & Xiaoyi Ouyang & Yeqing Zong & Haoqian M. Zhang & Qi Ouyang & Long Qian & Chunbo Lou, 2023. "Precise programming of multigene expression stoichiometry in mammalian cells by a modular and programmable transcriptional system," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
- Hsin-Ho Huang & Yili Qian & Domitilla Del Vecchio, 2018. "A quasi-integral controller for adaptation of genetic modules to variable ribosome demand," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
- Roberto Di Blasi & Masue M. Marbiah & Velia Siciliano & Karen Polizzi & Francesca Ceroni, 2021. "A call for caution in analysing mammalian co-transfection experiments and implications of resource competition in data misinterpretation," Nature Communications, Nature, vol. 12(1), pages 1-6, December.
- Ross D. Jones & Yili Qian & Velia Siciliano & Breanna DiAndreth & Jin Huh & Ron Weiss & Domitilla Del Vecchio, 2020. "An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells," Nature Communications, Nature, vol. 11(1), pages 1-16, December.
- Erik D. Carlson & Anne E. d’Aquino & Do Soon Kim & Emily M. Fulk & Kim Hoang & Teresa Szal & Alexander S. Mankin & Michael C. Jewett, 2019. "Engineered ribosomes with tethered subunits for expanding biological function," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
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- Andras Gyorgy, 2023. "Competition and evolutionary selection among core regulatory motifs in gene expression control," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
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