Electrostatic interactions guide substrate recognition of the prokaryotic ubiquitin-like protein ligase PafA
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DOI: 10.1038/s41467-023-40807-8
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- Andreas U. Müller & Marc Leibundgut & Nenad Ban & Eilika Weber-Ban, 2019. "Structure and functional implications of WYL domain-containing bacterial DNA damage response regulator PafBC," Nature Communications, Nature, vol. 10(1), pages 1-14, December.
- S. T. Cole & R. Brosch & J. Parkhill & T. Garnier & C. Churcher & D. Harris & S. V. Gordon & K. Eiglmeier & S. Gas & C. E. Barry & F. Tekaia & K. Badcock & D. Basham & D. Brown & T. Chillingworth & R., 1998. "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence," Nature, Nature, vol. 393(6685), pages 537-544, June.
- S. T. Cole & R. Brosch & J. Parkhill & T. Garnier & C. Churcher & D. Harris & S. V. Gordon & K. Eiglmeier & S. Gas & C. E. Barry & F. Tekaia & K. Badcock & D. Basham & D. Brown & T. Chillingworth & R., 1998. "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence," Nature, Nature, vol. 396(6707), pages 190-190, November.
- Hengjun Cui & Andreas U. Müller & Marc Leibundgut & Jiawen Tian & Nenad Ban & Eilika Weber-Ban, 2021. "Structures of prokaryotic ubiquitin-like protein Pup in complex with depupylase Dop reveal the mechanism of catalytic phosphate formation," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
- John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
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