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Mycobacterium tuberculosis strain with deletions in menT3 and menT4 is attenuated and confers protection in mice and guinea pigs

Author

Listed:
  • Tannu Priya Gosain

    (NCR Biotech Science Cluster)

  • Saurabh Chugh

    (NCR Biotech Science Cluster)

  • Zaigham Abbas Rizvi

    (NCR Biotech Science Cluster)

  • Neeraj Kumar Chauhan

    (NCR Biotech Science Cluster)

  • Saqib Kidwai

    (NCR Biotech Science Cluster)

  • Krishan Gopal Thakur

    (Council of Scientific and Industrial Research-Institute of Microbial Technology (CSIR-IMTECH))

  • Amit Awasthi

    (NCR Biotech Science Cluster)

  • Ramandeep Singh

    (NCR Biotech Science Cluster)

Abstract

The genome of Mycobacterium tuberculosis encodes for a large repertoire of toxin-antitoxin systems. In the present study, MenT3 and MenT4 toxins belonging to MenAT subfamily of TA systems have been functionally characterized. We demonstrate that ectopic expression of these toxins inhibits bacterial growth and this is rescued upon co-expression of their cognate antitoxins. Here, we show that simultaneous deletion of menT3 and menT4 results in enhanced susceptibility of M. tuberculosis upon exposure to oxidative stress and attenuated growth in guinea pigs and mice. We observed reduced expression of transcripts encoding for proteins that are essential or required for intracellular growth in mid-log phase cultures of ΔmenT4ΔT3 compared to parental strain. Further, the transcript levels of proteins involved in efficient bacterial clearance were increased in lung tissues of ΔmenT4ΔT3 infected mice relative to parental strain infected mice. We show that immunization of mice and guinea pigs with ΔmenT4ΔT3 confers significant protection against M. tuberculosis infection. Remarkably, immunization of mice with ΔmenT4ΔT3 results in increased antigen-specific TH1 bias and activated memory T cell response. We conclude that MenT3 and MenT4 are important for M. tuberculosis pathogenicity and strains lacking menT3 and menT4 have the potential to be explored further as vaccine candidates.

Suggested Citation

  • Tannu Priya Gosain & Saurabh Chugh & Zaigham Abbas Rizvi & Neeraj Kumar Chauhan & Saqib Kidwai & Krishan Gopal Thakur & Amit Awasthi & Ramandeep Singh, 2024. "Mycobacterium tuberculosis strain with deletions in menT3 and menT4 is attenuated and confers protection in mice and guinea pigs," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-49246-5
    DOI: 10.1038/s41467-024-49246-5
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    References listed on IDEAS

    as
    1. Hatice Akarsu & Patricia Bordes & Moise Mansour & Donna-Joe Bigot & Pierre Genevaux & Laurent Falquet, 2019. "TASmania: A bacterial Toxin-Antitoxin Systems database," PLOS Computational Biology, Public Library of Science, vol. 15(4), pages 1-28, April.
    2. Xibing Xu & Ben Usher & Claude Gutierrez & Roland Barriot & Tom J. Arrowsmith & Xue Han & Peter Redder & Olivier Neyrolles & Tim R. Blower & Pierre Genevaux, 2023. "MenT nucleotidyltransferase toxins extend tRNA acceptor stems and can be inhibited by asymmetrical antitoxin binding," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
    3. Prabhakar Tiwari & Garima Arora & Mamta Singh & Saqib Kidwai & Om Prakash Narayan & Ramandeep Singh, 2015. "MazF ribonucleases promote Mycobacterium tuberculosis drug tolerance and virulence in guinea pigs," Nature Communications, Nature, vol. 6(1), pages 1-13, May.
    4. S. T. Cole & R. Brosch & J. Parkhill & T. Garnier & C. Churcher & D. Harris & S. V. Gordon & K. Eiglmeier & S. Gas & C. E. Barry & F. Tekaia & K. Badcock & D. Basham & D. Brown & T. Chillingworth & R., 1998. "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence," Nature, Nature, vol. 393(6685), pages 537-544, June.
    5. S. T. Cole & R. Brosch & J. Parkhill & T. Garnier & C. Churcher & D. Harris & S. V. Gordon & K. Eiglmeier & S. Gas & C. E. Barry & F. Tekaia & K. Badcock & D. Basham & D. Brown & T. Chillingworth & R., 1998. "Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence," Nature, Nature, vol. 396(6707), pages 190-190, November.
    6. Prabhakar Tiwari & Garima Arora & Mamta Singh & Saqib Kidwai & Om Prakash Narayan & Ramandeep Singh, 2015. "Correction: Corrigendum: MazF ribonucleases promote Mycobacterium tuberculosis drug tolerance and virulence in guinea pigs," Nature Communications, Nature, vol. 6(1), pages 1-1, November.
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