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The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis

Author

Listed:
  • Ziyu Zhao

    (S. Kensington Campus)

  • Irene Vercellino

    (Institute of Science and Technology Austria
    Forschungszentrum Jülich GmbH, Wilhelm-Johnen-Straße)

  • Jana Knoppová

    (Academy of Sciences of the Czech Republic, Opatovický mlýn)

  • Roman Sobotka

    (Academy of Sciences of the Czech Republic, Opatovický mlýn
    University of South Bohemia)

  • James W. Murray

    (S. Kensington Campus)

  • Peter J. Nixon

    (S. Kensington Campus)

  • Leonid A. Sazanov

    (Institute of Science and Technology Austria)

  • Josef Komenda

    (Academy of Sciences of the Czech Republic, Opatovický mlýn
    University of South Bohemia)

Abstract

Robust oxygenic photosynthesis requires a suite of accessory factors to ensure efficient assembly and repair of the oxygen-evolving photosystem two (PSII) complex. The highly conserved Ycf48 assembly factor binds to the newly synthesized D1 reaction center polypeptide and promotes the initial steps of PSII assembly, but its binding site is unclear. Here we use cryo-electron microscopy to determine the structure of a cyanobacterial PSII D1/D2 reaction center assembly complex with Ycf48 attached. Ycf48, a 7-bladed beta propeller, binds to the amino-acid residues of D1 that ultimately ligate the water-oxidising Mn4CaO5 cluster, thereby preventing the premature binding of Mn2+ and Ca2+ ions and protecting the site from damage. Interactions with D2 help explain how Ycf48 promotes assembly of the D1/D2 complex. Overall, our work provides valuable insights into the early stages of PSII assembly and the structural changes that create the binding site for the Mn4CaO5 cluster.

Suggested Citation

  • Ziyu Zhao & Irene Vercellino & Jana Knoppová & Roman Sobotka & James W. Murray & Peter J. Nixon & Leonid A. Sazanov & Josef Komenda, 2023. "The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40388-6
    DOI: 10.1038/s41467-023-40388-6
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    References listed on IDEAS

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    1. Yasufumi Umena & Keisuke Kawakami & Jian-Ren Shen & Nobuo Kamiya, 2011. "Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å," Nature, Nature, vol. 473(7345), pages 55-60, May.
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    3. Rana Hussein & Mohamed Ibrahim & Asmit Bhowmick & Philipp S. Simon & Ruchira Chatterjee & Louise Lassalle & Margaret Doyle & Isabel Bogacz & In-Sik Kim & Mun Hon Cheah & Sheraz Gul & Casper Lichtenber, 2021. "Structural dynamics in the water and proton channels of photosystem II during the S2 to S3 transition," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
    4. Patrick Jordan & Petra Fromme & Horst Tobias Witt & Olaf Klukas & Wolfram Saenger & Norbert Krauß, 2001. "Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution," Nature, Nature, vol. 411(6840), pages 909-917, June.
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    1. Lin Zhang & Junxiang Ruan & Fudan Gao & Qiang Xin & Li-Ping Che & Lujuan Cai & Zekun Liu & Mengmeng Kong & Jean-David Rochaix & Hualing Mi & Lianwei Peng, 2024. "Thylakoid protein FPB1 synergistically cooperates with PAM68 to promote CP47 biogenesis and Photosystem II assembly," Nature Communications, Nature, vol. 15(1), pages 1-17, December.

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