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Experimental validation of the free-energy principle with in vitro neural networks

Author

Listed:
  • Takuya Isomura

    (RIKEN Center for Brain Science, 2-1 Hirosawa, Wako)

  • Kiyoshi Kotani

    (The University of Tokyo, 4-6-1 Komaba, Meguro-ku)

  • Yasuhiko Jimbo

    (The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku)

  • Karl J. Friston

    (University College London
    VERSES AI Research Lab)

Abstract

Empirical applications of the free-energy principle are not straightforward because they entail a commitment to a particular process theory, especially at the cellular and synaptic levels. Using a recently established reverse engineering technique, we confirm the quantitative predictions of the free-energy principle using in vitro networks of rat cortical neurons that perform causal inference. Upon receiving electrical stimuli—generated by mixing two hidden sources—neurons self-organised to selectively encode the two sources. Pharmacological up- and downregulation of network excitability disrupted the ensuing inference, consistent with changes in prior beliefs about hidden sources. As predicted, changes in effective synaptic connectivity reduced variational free energy, where the connection strengths encoded parameters of the generative model. In short, we show that variational free energy minimisation can quantitatively predict the self-organisation of neuronal networks, in terms of their responses and plasticity. These results demonstrate the applicability of the free-energy principle to in vitro neural networks and establish its predictive validity in this setting.

Suggested Citation

  • Takuya Isomura & Kiyoshi Kotani & Yasuhiko Jimbo & Karl J. Friston, 2023. "Experimental validation of the free-energy principle with in vitro neural networks," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40141-z
    DOI: 10.1038/s41467-023-40141-z
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    References listed on IDEAS

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    1. David M. Blei & Alp Kucukelbir & Jon D. McAuliffe, 2017. "Variational Inference: A Review for Statisticians," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(518), pages 859-877, April.
    2. David Kappel & Bernhard Nessler & Wolfgang Maass, 2014. "STDP Installs in Winner-Take-All Circuits an Online Approximation to Hidden Markov Model Learning," PLOS Computational Biology, Public Library of Science, vol. 10(3), pages 1-22, March.
    3. Nima Mesgarani & Edward F. Chang, 2012. "Selective cortical representation of attended speaker in multi-talker speech perception," Nature, Nature, vol. 485(7397), pages 233-236, May.
    4. Kaushik Roy & Akhilesh Jaiswal & Priyadarshini Panda, 2019. "Towards spike-based machine intelligence with neuromorphic computing," Nature, Nature, vol. 575(7784), pages 607-617, November.
    5. Makio Torigoe & Tanvir Islam & Hisaya Kakinuma & Chi Chung Alan Fung & Takuya Isomura & Hideaki Shimazaki & Tazu Aoki & Tomoki Fukai & Hitoshi Okamoto, 2021. "Zebrafish capable of generating future state prediction error show improved active avoidance behavior in virtual reality," Nature Communications, Nature, vol. 12(1), pages 1-21, December.
    6. Xinyue Yuan & Manuel Schröter & Marie Engelene J. Obien & Michele Fiscella & Wei Gong & Tetsuhiro Kikuchi & Aoi Odawara & Shuhei Noji & Ikuro Suzuki & Jun Takahashi & Andreas Hierlemann & Urs Frey, 2020. "Versatile live-cell activity analysis platform for characterization of neuronal dynamics at single-cell and network level," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
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