Joint analysis of phenotype-effect-generation identifies loci associated with grain quality traits in rice hybrids
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DOI: 10.1038/s41467-023-39534-x
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- Xiaolei Liu & Meng Huang & Bin Fan & Edward S Buckler & Zhiwu Zhang, 2016. "Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies," PLOS Genetics, Public Library of Science, vol. 12(2), pages 1-24, February.
- Qian Liu & Ruixi Han & Kun Wu & Jianqing Zhang & Yafeng Ye & Shuansuo Wang & Jianfeng Chen & Yajun Pan & Qi Li & Xiaopeng Xu & Jiawu Zhou & Dayun Tao & Yuejin Wu & Xiangdong Fu, 2018. "G-protein βγ subunits determine grain size through interaction with MADS-domain transcription factors in rice," Nature Communications, Nature, vol. 9(1), pages 1-12, December.
- Dong-Sheng Zhao & Qian-Feng Li & Chang-Quan Zhang & Chen Zhang & Qing-Qing Yang & Li-Xu Pan & Xin-Yu Ren & Jun Lu & Ming-Hong Gu & Qiao-Quan Liu, 2018. "GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality," Nature Communications, Nature, vol. 9(1), pages 1-14, December.
- Xuehui Huang & Shihua Yang & Junyi Gong & Yan Zhao & Qi Feng & Hao Gong & Wenjun Li & Qilin Zhan & Benyi Cheng & Junhui Xia & Neng Chen & Zhongna Hao & Kunyan Liu & Chuanrang Zhu & Tao Huang & Qiang Z, 2015. "Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis," Nature Communications, Nature, vol. 6(1), pages 1-9, May.
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