Adaptive gene loss in the common bean pan-genome during range expansion and domestication
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DOI: 10.1038/s41467-024-51032-2
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- Murukarthick Jayakodi & Sudharsan Padmarasu & Georg Haberer & Venkata Suresh Bonthala & Heidrun Gundlach & Cécile Monat & Thomas Lux & Nadia Kamal & Daniel Lang & Axel Himmelbach & Jennifer Ens & Xiao, 2020. "The barley pan-genome reveals the hidden legacy of mutation breeding," Nature, Nature, vol. 588(7837), pages 284-289, December.
- Dieter Gerten & Vera Heck & Jonas Jägermeyr & Benjamin Leon Bodirsky & Ingo Fetzer & Mika Jalava & Matti Kummu & Wolfgang Lucht & Johan Rockström & Sibyll Schaphoff & Hans Joachim Schellnhuber, 2020. "Feeding ten billion people is possible within four terrestrial planetary boundaries," Nature Sustainability, Nature, vol. 3(3), pages 200-208, March.
- Landgraf, Andrew J. & Lee, Yoonkyung, 2020. "Dimensionality reduction for binary data through the projection of natural parameters," Journal of Multivariate Analysis, Elsevier, vol. 180(C).
- Yingyao Zhou & Bin Zhou & Lars Pache & Max Chang & Alireza Hadj Khodabakhshi & Olga Tanaseichuk & Christopher Benner & Sumit K. Chanda, 2019. "Metascape provides a biologist-oriented resource for the analysis of systems-level datasets," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
- Xiaolei Liu & Meng Huang & Bin Fan & Edward S Buckler & Zhiwu Zhang, 2016. "Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome-Wide Association Studies," PLOS Genetics, Public Library of Science, vol. 12(2), pages 1-24, February.
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