A Cas3-base editing tool for targetable in vivo mutagenesis
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DOI: 10.1038/s41467-023-39087-z
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- Peter Edge & Vikas Bansal, 2019. "Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing," Nature Communications, Nature, vol. 10(1), pages 1-10, December.
- Harris H. Wang & Farren J. Isaacs & Peter A. Carr & Zachary Z. Sun & George Xu & Craig R. Forest & George M. Church, 2009. "Programming cells by multiplex genome engineering and accelerated evolution," Nature, Nature, vol. 460(7257), pages 894-898, August.
- C. J. Paddon & P. J. Westfall & D. J. Pitera & K. Benjamin & K. Fisher & D. McPhee & M. D. Leavell & A. Tai & A. Main & D. Eng & D. R. Polichuk & K. H. Teoh & D. W. Reed & T. Treynor & J. Lenihan & H., 2013. "High-level semi-synthetic production of the potent antimalarial artemisinin," Nature, Nature, vol. 496(7446), pages 528-532, April.
- Kazuto Yoshimi & Kohei Takeshita & Noriyuki Kodera & Satomi Shibumura & Yuko Yamauchi & Mine Omatsu & Kenichi Umeda & Yayoi Kunihiro & Masaki Yamamoto & Tomoji Mashimo, 2022. "Dynamic mechanisms of CRISPR interference by Escherichia coli CRISPR-Cas3," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
- Bates, Douglas & Mächler, Martin & Bolker, Ben & Walker, Steve, 2015. "Fitting Linear Mixed-Effects Models Using lme4," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 67(i01).
- Aaron Cravens & Osman K. Jamil & Deze Kong & Jonathan T. Sockolosky & Christina D. Smolke, 2021. "Polymerase-guided base editing enables in vivo mutagenesis and rapid protein engineering," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
- Lenth, Russell V., 2016. "Least-Squares Means: The R Package lsmeans," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 69(i01).
- Beatriz Álvarez & Mario Mencía & Víctor Lorenzo & Luis Ángel Fernández, 2020. "In vivo diversification of target genomic sites using processive base deaminase fusions blocked by dCas9," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
- Kevin M. Esvelt & Jacob C. Carlson & David R. Liu, 2011. "A system for the continuous directed evolution of biomolecules," Nature, Nature, vol. 472(7344), pages 499-503, April.
- Shakked O. Halperin & Connor J. Tou & Eric B. Wong & Cyrus Modavi & David V. Schaffer & John E. Dueber, 2018. "CRISPR-guided DNA polymerases enable diversification of all nucleotides in a tunable window," Nature, Nature, vol. 560(7717), pages 248-252, August.
- Alexis C. Komor & Yongjoo B. Kim & Michael S. Packer & John A. Zuris & David R. Liu, 2016. "Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage," Nature, Nature, vol. 533(7603), pages 420-424, May.
- Hiroyuki Morisaka & Kazuto Yoshimi & Yuya Okuzaki & Peter Gee & Yayoi Kunihiro & Ekasit Sonpho & Huaigeng Xu & Noriko Sasakawa & Yuki Naito & Shinichiro Nakada & Takashi Yamamoto & Shigetoshi Sano & A, 2019. "CRISPR-Cas3 induces broad and unidirectional genome editing in human cells," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
- Nathan Crook & Joseph Abatemarco & Jie Sun & James M. Wagner & Alexander Schmitz & Hal S. Alper, 2016. "In vivo continuous evolution of genes and pathways in yeast," Nature Communications, Nature, vol. 7(1), pages 1-14, December.
- André B. Canelas & Nicola Harrison & Alessandro Fazio & Jie Zhang & Juha-Pekka Pitkänen & Joost van den Brink & Barbara M. Bakker & Lara Bogner & Jildau Bouwman & Juan I. Castrillo & Ayca Cankorur & P, 2010. "Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains," Nature Communications, Nature, vol. 1(1), pages 1-8, December.
- Xiaozhou Luo & Michael A. Reiter & Leo d’Espaux & Jeff Wong & Charles M. Denby & Anna Lechner & Yunfeng Zhang & Adrian T. Grzybowski & Simon Harth & Weiyin Lin & Hyunsu Lee & Changhua Yu & John Shin &, 2019. "Complete biosynthesis of cannabinoids and their unnatural analogues in yeast," Nature, Nature, vol. 567(7746), pages 123-126, March.
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Cited by:
- Meiling Lu & Chenlin Yu & Yuwen Zhang & Wenjun Ju & Zhi Ye & Chenyang Hua & Jinze Mao & Chunyi Hu & Zhenhuang Yang & Yibei Xiao, 2024. "Structure and genome editing of type I-B CRISPR-Cas," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Charlotte Cautereels & Jolien Smets & Peter Bircham & Dries De Ruysscher & Anna Zimmermann & Peter De Rijk & Jan Steensels & Anton Gorkovskiy & Joleen Masschelein & Kevin J. Verstrepen, 2024. "Combinatorial optimization of gene expression through recombinase-mediated promoter and terminator shuffling in yeast," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Jing Guo & Luyao Gong & Haiying Yu & Ming Li & Qiaohui An & Zhenquan Liu & Shuru Fan & Changjialian Yang & Dahe Zhao & Jing Han & Hua Xiang, 2024. "Engineered minimal type I CRISPR-Cas system for transcriptional activation and base editing in human cells," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
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