Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing
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DOI: 10.1038/s41467-019-12493-y
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Cited by:
- M. Mahmoud & Y. Huang & K. Garimella & P. A. Audano & W. Wan & N. Prasad & R. E. Handsaker & S. Hall & A. Pionzio & M. C. Schatz & M. E. Talkowski & E. E. Eichler & S. E. Levy & F. J. Sedlazeck, 2024. "Utility of long-read sequencing for All of Us," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Anna Zimmermann & Julian E. Prieto-Vivas & Charlotte Cautereels & Anton Gorkovskiy & Jan Steensels & Yves Peer & Kevin J. Verstrepen, 2023. "A Cas3-base editing tool for targetable in vivo mutagenesis," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Xiao Luo & Xiongbin Kang & Alexander Schönhuth, 2022. "VeChat: correcting errors in long reads using variation graphs," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Charlotte Cautereels & Jolien Smets & Peter Bircham & Dries De Ruysscher & Anna Zimmermann & Peter De Rijk & Jan Steensels & Anton Gorkovskiy & Joleen Masschelein & Kevin J. Verstrepen, 2024. "Combinatorial optimization of gene expression through recombinase-mediated promoter and terminator shuffling in yeast," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Cheng-Kai Shiau & Lina Lu & Rachel Kieser & Kazutaka Fukumura & Timothy Pan & Hsiao-Yun Lin & Jie Yang & Eric L. Tong & GaHyun Lee & Yuanqing Yan & Jason T. Huse & Ruli Gao, 2023. "High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
- Can Luo & Yichen Henry Liu & Xin Maizie Zhou, 2024. "VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Sina Majidian & Mohammad Hossein Kahaei & Dick de Ridder, 2020. "Minimum error correction-based haplotype assembly: Considerations for long read data," PLOS ONE, Public Library of Science, vol. 15(6), pages 1-12, June.
- Qian Zhou & Fahu Ji & Dongxiao Lin & Xianming Liu & Zexuan Zhu & Jue Ruan, 2024. "KSNP: a fast de Bruijn graph-based haplotyping tool approaching data-in time cost," Nature Communications, Nature, vol. 15(1), pages 1-7, December.
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