Engineering protein-based therapeutics through structural and chemical design
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DOI: 10.1038/s41467-023-38039-x
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- Jerod L. Ptacin & Carolina E. Caffaro & Lina Ma & Kristine M. San Jose Gall & Hans R. Aerni & Nicole V. Acuff & Rob W. Herman & Yelena Pavlova & Michael J. Pena & David B. Chen & Lilia K. Koriazova & , 2021. "An engineered IL-2 reprogrammed for anti-tumor therapy using a semi-synthetic organism," Nature Communications, Nature, vol. 12(1), pages 1-14, December.
- Chang-Han Lee & Tae Hyun Kang & Ophélie Godon & Makiko Watanabe & George Delidakis & Caitlin M. Gillis & Delphine Sterlin & David Hardy & Michel Cogné & Lynn E. Macdonald & Andrew J. Murphy & Naxin Tu, 2019. "An engineered human Fc domain that behaves like a pH-toggle switch for ultra-long circulation persistence," Nature Communications, Nature, vol. 10(1), pages 1-11, December.
- Longxing Cao & Brian Coventry & Inna Goreshnik & Buwei Huang & William Sheffler & Joon Sung Park & Kevin M. Jude & Iva Marković & Rameshwar U. Kadam & Koen H. G. Verschueren & Kenneth Verstraete & Sco, 2022. "Design of protein-binding proteins from the target structure alone," Nature, Nature, vol. 605(7910), pages 551-560, May.
- Po-Ssu Huang & Scott E. Boyken & David Baker, 2016. "The coming of age of de novo protein design," Nature, Nature, vol. 537(7620), pages 320-327, September.
- Chang-Han Lee & Tae Hyun Kang & Ophélie Godon & Makiko Watanabe & George Delidakis & Caitlin M. Gillis & Delphine Sterlin & David Hardy & Michel Cogné & Lynn E. Macdonald & Andrew J. Murphy & Naxin Tu, 2019. "Publisher Correction: An engineered human Fc domain that behaves like a pH-toggle switch for ultra-long circulation persistence," Nature Communications, Nature, vol. 10(1), pages 1-1, December.
- Daniel-Adriano Silva & Shawn Yu & Umut Y. Ulge & Jamie B. Spangler & Kevin M. Jude & Carlos Labão-Almeida & Lestat R. Ali & Alfredo Quijano-Rubio & Mikel Ruterbusch & Isabel Leung & Tamara Biary & Ste, 2019. "De novo design of potent and selective mimics of IL-2 and IL-15," Nature, Nature, vol. 565(7738), pages 186-191, January.
- Aaron Chevalier & Daniel-Adriano Silva & Gabriel J. Rocklin & Derrick R. Hicks & Renan Vergara & Patience Murapa & Steffen M. Bernard & Lu Zhang & Kwok-Ho Lam & Guorui Yao & Christopher D. Bahl & Shin, 2017. "Massively parallel de novo protein design for targeted therapeutics," Nature, Nature, vol. 550(7674), pages 74-79, October.
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- Lucien F. Krapp & Fernando A. Meireles & Luciano A. Abriata & Jean Devillard & Sarah Vacle & Maria J. Marcaida & Matteo Dal Peraro, 2024. "Context-aware geometric deep learning for protein sequence design," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Ziying Li & Kaiyuan Song & Yu Chen & Qijing Huang & Lujia You & Li Yu & Baiyang Chen & Zihang Yuan & Yaqin Xu & Yue Su & Lintai Da & Xinyuan Zhu & Ruijiao Dong, 2024. "Sequence-encoded bioactive protein-multiblock polymer conjugates via quantitative one-pot iterative living polymerization," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
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