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Distinct roles of Arabidopsis ORC1 proteins in DNA replication and heterochromatic H3K27me1 deposition

Author

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  • Zaida Vergara

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco)

  • María S. Gomez

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco)

  • Bénédicte Desvoyes

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco)

  • Joana Sequeira-Mendes

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco)

  • Kinda Masoud

    (Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg)

  • Celina Costas

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco
    ANFACO-CECOPESCA)

  • Sandra Noir

    (Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg)

  • Elena Caro

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco
    Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA))

  • Victoria Mora-Gil

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco)

  • Pascal Genschik

    (Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg)

  • Crisanto Gutierrez

    (Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Nicolás Cabrera 1, Cantoblanco)

Abstract

Most cellular proteins involved in genome replication are conserved in all eukaryotic lineages including yeast, plants and animals. However, the mechanisms controlling their availability during the cell cycle are less well defined. Here we show that the Arabidopsis genome encodes for two ORC1 proteins highly similar in amino acid sequence and that have partially overlapping expression domains but with distinct functions. The ancestral ORC1b gene, present before the partial duplication of the Arabidopsis genome, has retained the canonical function in DNA replication. ORC1b is expressed in both proliferating and endoreplicating cells, accumulates during G1 and is rapidly degraded upon S-phase entry through the ubiquitin-proteasome pathway. In contrast, the duplicated ORC1a gene has acquired a specialized function in heterochromatin biology. ORC1a is required for efficient deposition of the heterochromatic H3K27me1 mark by the ATXR5/6 histone methyltransferases. The distinct roles of the two ORC1 proteins may be a feature common to other organisms with duplicated ORC1 genes and a major difference with animal cells.

Suggested Citation

  • Zaida Vergara & María S. Gomez & Bénédicte Desvoyes & Joana Sequeira-Mendes & Kinda Masoud & Celina Costas & Sandra Noir & Elena Caro & Victoria Mora-Gil & Pascal Genschik & Crisanto Gutierrez, 2023. "Distinct roles of Arabidopsis ORC1 proteins in DNA replication and heterochromatic H3K27me1 deposition," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37024-8
    DOI: 10.1038/s41467-023-37024-8
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    References listed on IDEAS

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    1. Joseph T. P. Yeeles & Tom D. Deegan & Agnieszka Janska & Anne Early & John F. X. Diffley, 2015. "Regulated eukaryotic DNA replication origin firing with purified proteins," Nature, Nature, vol. 519(7544), pages 431-435, March.
    2. Yannick Jacob & Hume Stroud & Chantal LeBlanc & Suhua Feng & Luting Zhuo & Elena Caro & Christiane Hassel & Crisanto Gutierrez & Scott D. Michaels & Steven E. Jacobsen, 2010. "Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases," Nature, Nature, vol. 466(7309), pages 987-991, August.
    3. Alex J. Kuo & Jikui Song & Peggie Cheung & Satoko Ishibe-Murakami & Sayumi Yamazoe & James K. Chen & Dinshaw J. Patel & Or Gozani, 2012. "The BAH domain of ORC1 links H4K20me2 to DNA replication licensing and Meier–Gorlin syndrome," Nature, Nature, vol. 484(7392), pages 115-119, April.
    4. Ferdos Abid Ali & Max E. Douglas & Julia Locke & Valerie E. Pye & Andrea Nans & John F. X. Diffley & Alessandro Costa, 2017. "Cryo-EM structure of a licensed DNA replication origin," Nature Communications, Nature, vol. 8(1), pages 1-10, December.
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    1. Qin Li & Jincong Zhou & Shuai Li & Weifeng Zhang & Yingxue Du & Kuan Li & Yingxiang Wang & Qianwen Sun, 2023. "DNA polymerase ε harmonizes topological states and R-loops formation to maintain genome integrity in Arabidopsis," Nature Communications, Nature, vol. 14(1), pages 1-19, December.

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