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Evolutionary rescue of resistant mutants is governed by a balance between radial expansion and selection in compact populations

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  • Serhii Aif

    (Max Planck Institute for the Science of Light & Max-Planck-Zentrum für Physik und Medizin
    Friedrich-Alexander-University Erlangen-Nürnberg)

  • Nico Appold

    (Max Planck Institute for the Science of Light & Max-Planck-Zentrum für Physik und Medizin
    Friedrich-Alexander-University Erlangen-Nürnberg)

  • Lucas Kampman

    (University of California
    University of California)

  • Oskar Hallatschek

    (University of California
    University of California
    Leipzig University)

  • Jona Kayser

    (Max Planck Institute for the Science of Light & Max-Planck-Zentrum für Physik und Medizin
    Friedrich-Alexander-University Erlangen-Nürnberg)

Abstract

Mutation-mediated treatment resistance is one of the primary challenges for modern antibiotic and anti-cancer therapy. Yet, many resistance mutations have a substantial fitness cost and are subject to purifying selection. How emerging resistant lineages may escape purifying selection via subsequent compensatory mutations is still unclear due to the difficulty of tracking such evolutionary rescue dynamics in space and time. Here, we introduce a system of fluorescence-coupled synthetic mutations to show that the probability of evolutionary rescue, and the resulting long-term persistence of drug resistant mutant lineages, is dramatically increased in dense microbial populations. By tracking the entire evolutionary trajectory of thousands of resistant lineages in expanding yeast colonies we uncover an underlying quasi-stable equilibrium between the opposing forces of radial expansion and natural selection, a phenomenon we term inflation-selection balance. Tailored computational models and agent-based simulations corroborate the fundamental nature of the observed effects and demonstrate the potential impact on drug resistance evolution in cancer. The described phenomena should be considered when predicting multi-step evolutionary dynamics in any mechanically compact cellular population, including pathogenic microbial biofilms and solid tumors. The insights gained will be especially valuable for the quantitative understanding of response to treatment, including emerging evolution-based therapy strategies.

Suggested Citation

  • Serhii Aif & Nico Appold & Lucas Kampman & Oskar Hallatschek & Jona Kayser, 2022. "Evolutionary rescue of resistant mutants is governed by a balance between radial expansion and selection in compact populations," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-35484-y
    DOI: 10.1038/s41467-022-35484-y
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    1. Bartlomiej Waclaw & Ivana Bozic & Meredith E. Pittman & Ralph H. Hruban & Bert Vogelstein & Martin A. Nowak, 2015. "A spatial model predicts that dispersal and cell turnover limit intratumour heterogeneity," Nature, Nature, vol. 525(7568), pages 261-264, September.
    2. Benjamin H. Good & Michael J. McDonald & Jeffrey E. Barrick & Richard E. Lenski & Michael M. Desai, 2017. "The dynamics of molecular evolution over 60,000 generations," Nature, Nature, vol. 551(7678), pages 45-50, November.
    3. Jing Yan & Carey D. Nadell & Howard A. Stone & Ned S. Wingreen & Bonnie L. Bassler, 2017. "Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion," Nature Communications, Nature, vol. 8(1), pages 1-11, December.
    4. Weissman, Daniel B. & Desai, Michael M. & Fisher, Daniel S. & Feldman, Marcus W., 2009. "The rate at which asexual populations cross fitness valleys," Theoretical Population Biology, Elsevier, vol. 75(4), pages 286-300.
    5. Bryan T Weinstein & Maxim O Lavrentovich & Wolfram Möbius & Andrew W Murray & David R Nelson, 2017. "Genetic drift and selection in many-allele range expansions," PLOS Computational Biology, Public Library of Science, vol. 13(12), pages 1-31, December.
    6. Jingsong Zhang & Jessica J. Cunningham & Joel S. Brown & Robert A. Gatenby, 2017. "Integrating evolutionary dynamics into treatment of metastatic castrate-resistant prostate cancer," Nature Communications, Nature, vol. 8(1), pages 1-9, December.
    7. Alex N. Nguyen Ba & Ivana Cvijović & José I. Rojas Echenique & Katherine R. Lawrence & Artur Rego-Costa & Xianan Liu & Sasha F. Levy & Michael M. Desai, 2019. "High-resolution lineage tracking reveals travelling wave of adaptation in laboratory yeast," Nature, Nature, vol. 575(7783), pages 494-499, November.
    8. Diana Fusco & Matti Gralka & Jona Kayser & Alex Anderson & Oskar Hallatschek, 2016. "Excess of mutational jackpot events in expanding populations revealed by spatial Luria–Delbrück experiments," Nature Communications, Nature, vol. 7(1), pages 1-9, November.
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