CLIMB: High-dimensional association detection in large scale genomic data
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DOI: 10.1038/s41467-022-34360-z
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- David Amar & Ron Shamir & Daniel Yekutieli, 2017. "Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate," PLOS Computational Biology, Public Library of Science, vol. 13(8), pages 1-22, August.
- Yoav Benjamini & Ruth Heller, 2008. "Screening for Partial Conjunction Hypotheses," Biometrics, The International Biometric Society, vol. 64(4), pages 1215-1222, December.
- Ferguson John P. & Cho Judy H. & Zhao Hongyu, 2012. "A New Approach for the Joint Analysis of Multiple Chip-Seq Libraries with Application to Histone Modification," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 11(3), pages 1-21, February.
- Timothée Flutre & Xiaoquan Wen & Jonathan Pritchard & Matthew Stephens, 2013. "A Statistical Framework for Joint eQTL Analysis in Multiple Tissues," PLOS Genetics, Public Library of Science, vol. 9(5), pages 1-13, May.
- Robert E. Thurman & Eric Rynes & Richard Humbert & Jeff Vierstra & Matthew T. Maurano & Eric Haugen & Nathan C. Sheffield & Andrew B. Stergachis & Hao Wang & Benjamin Vernot & Kavita Garg & Sam John &, 2012. "The accessible chromatin landscape of the human genome," Nature, Nature, vol. 489(7414), pages 75-82, September.
- Vasdekis, Vassilis G. S. & Rizopoulos, Dimitris & Moustaki, Irini, 2014. "Weighted pairwise likelihood estimation for a general class of random effects models," LSE Research Online Documents on Economics 56733, London School of Economics and Political Science, LSE Library.
- Wouter Meuleman & Alexander Muratov & Eric Rynes & Jessica Halow & Kristen Lee & Daniel Bates & Morgan Diegel & Douglas Dunn & Fidencio Neri & Athanasios Teodosiadis & Alex Reynolds & Eric Haugen & Je, 2020. "Index and biological spectrum of human DNase I hypersensitive sites," Nature, Nature, vol. 584(7820), pages 244-251, August.
- Steffen Fieuws & Geert Verbeke & Filip Boen & Christophe Delecluse, 2006. "High dimensional multivariate mixed models for binary questionnaire data," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 55(4), pages 449-460, August.
- Molenberghs, Geert & Verbeke, Geert & Iddi, Samuel, 2011. "Pseudo-likelihood methodology for partitioned large and complex samples," Statistics & Probability Letters, Elsevier, vol. 81(7), pages 892-901, July.
- Jeff Vierstra & John Lazar & Richard Sandstrom & Jessica Halow & Kristen Lee & Daniel Bates & Morgan Diegel & Douglas Dunn & Fidencio Neri & Eric Haugen & Eric Rynes & Alex Reynolds & Jemma Nelson & A, 2020. "Global reference mapping of human transcription factor footprints," Nature, Nature, vol. 583(7818), pages 729-736, July.
- Dmitri D. Pervouchine & Sarah Djebali & Alessandra Breschi & Carrie A. Davis & Pablo Prieto Barja & Alex Dobin & Andrea Tanzer & Julien Lagarde & Chris Zaleski & Lei-Hoon See & Meagan Fastuca & Jorg D, 2015. "Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression," Nature Communications, Nature, vol. 6(1), pages 1-11, May.
- Vivek Behera & Perry Evans & Carolyne J. Face & Nicole Hamagami & Laavanya Sankaranarayanan & Cheryl A. Keller & Belinda Giardine & Kai Tan & Ross C. Hardison & Junwei Shi & Gerd A. Blobel, 2018. "Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility," Nature Communications, Nature, vol. 9(1), pages 1-15, December.
- D. R. Cox, 2004. "A note on pseudolikelihood constructed from marginal densities," Biometrika, Biometrika Trust, vol. 91(3), pages 729-737, September.
- Chib, Siddhartha, 1992. "Bayes inference in the Tobit censored regression model," Journal of Econometrics, Elsevier, vol. 51(1-2), pages 79-99.
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