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Marginal false discovery rate for a penalized transformation survival model

Author

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  • Liang, Weijuan
  • Ma, Shuangge
  • Lin, Cunjie

Abstract

Survival analysis that involves moderate/high dimensional covariates has become common. Most of the existing analyses have been focused on estimation and variable selection, using penalization and other regularization techniques. To draw more definitive conclusions, a handful of studies have also conducted inference. The recently developed mFDR (marginal false discovery rate) technique provides an alternative inference perspective and can be advantageous in multiple aspects. The existing inference studies for regularized estimation of survival data with moderate/high dimensional covariates assume the Cox and other specific models, which may not be sufficiently flexible. To tackle this problem, the analysis scope is expanded to the transformation model, which is robust and has been shown to be desirable for practical data analysis. Statistical validity is rigorously established. Two data analyses are conducted. Overall, an alternative inference approach has been developed for survival analysis with moderate/high dimensional data.

Suggested Citation

  • Liang, Weijuan & Ma, Shuangge & Lin, Cunjie, 2021. "Marginal false discovery rate for a penalized transformation survival model," Computational Statistics & Data Analysis, Elsevier, vol. 160(C).
  • Handle: RePEc:eee:csdana:v:160:y:2021:i:c:s0167947321000669
    DOI: 10.1016/j.csda.2021.107232
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    References listed on IDEAS

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    1. Shi, Xingjie & Huang, Yuan & Huang, Jian & Ma, Shuangge, 2018. "A Forward and Backward Stagewise algorithm for nonconvex loss functions with adaptive Lasso," Computational Statistics & Data Analysis, Elsevier, vol. 124(C), pages 235-251.
    2. Meinshausen, Nicolai & Meier, Lukas & Bühlmann, Peter, 2009. "p-Values for High-Dimensional Regression," Journal of the American Statistical Association, American Statistical Association, vol. 104(488), pages 1671-1681.
    3. Rui Song & Wenbin Lu & Shuangge Ma & X. Jessie Jeng, 2014. "Censored rank independence screening for high-dimensional survival data," Biometrika, Biometrika Trust, vol. 101(4), pages 799-814.
    4. Xiao Song & Shuangge Ma, 2010. "Penalised variable selection with U-estimates," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 22(4), pages 499-515.
    5. Han, Aaron K., 1987. "Non-parametric analysis of a generalized regression model : The maximum rank correlation estimator," Journal of Econometrics, Elsevier, vol. 35(2-3), pages 303-316, July.
    6. Khan, Shakeeb & Tamer, Elie, 2007. "Partial rank estimation of duration models with general forms of censoring," Journal of Econometrics, Elsevier, vol. 136(1), pages 251-280, January.
    7. Ryan J. Tibshirani & Jonathan Taylor & Richard Lockhart & Robert Tibshirani, 2016. "Exact Post-Selection Inference for Sequential Regression Procedures," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 600-620, April.
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    Cited by:

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