The impact of genetic diversity statistics on model selection between coalescents
Author
Abstract
Suggested Citation
DOI: 10.1016/j.csda.2020.107055
Download full text from publisher
As the access to this document is restricted, you may want to search for a different version of it.
References listed on IDEAS
- Wright, Marvin N. & Ziegler, Andreas, 2017. "ranger: A Fast Implementation of Random Forests for High Dimensional Data in C++ and R," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 77(i01).
- Hobolth, Asger & Siri-Jégousse, Arno & Bladt, Mogens, 2019. "Phase-type distributions in population genetics," Theoretical Population Biology, Elsevier, vol. 127(C), pages 16-32.
- Blath, Jochen & Cronjäger, Mathias Christensen & Eldon, Bjarki & Hammer, Matthias, 2016. "The site-frequency spectrum associated with Ξ-coalescents," Theoretical Population Biology, Elsevier, vol. 110(C), pages 36-50.
- Durrett, Rick & Schweinsberg, Jason, 2005. "A coalescent model for the effect of advantageous mutations on the genealogy of a population," Stochastic Processes and their Applications, Elsevier, vol. 115(10), pages 1628-1657, October.
- Schweinsberg, Jason, 2003. "Coalescent processes obtained from supercritical Galton-Watson processes," Stochastic Processes and their Applications, Elsevier, vol. 106(1), pages 107-139, July.
- Steinrücken, Matthias & Birkner, Matthias & Blath, Jochen, 2013. "Analysis of DNA sequence variation within marine species using Beta-coalescents," Theoretical Population Biology, Elsevier, vol. 87(C), pages 15-24.
- Koskela Jere, 2018. "Multi-locus data distinguishes between population growth and multiple merger coalescents," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 17(3), pages 1-21, June.
- Koskela Jere, 2018. "Multi-locus data distinguishes between population growth and multiple merger coalescents," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 17(3), pages 1-21, June.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Hobolth, Asger & Rivas-González, Iker & Bladt, Mogens & Futschik, Andreas, 2024. "Phase-type distributions in mathematical population genetics: An emerging framework," Theoretical Population Biology, Elsevier, vol. 157(C), pages 14-32.
- Miró Pina, Verónica & Joly, Émilien & Siri-Jégousse, Arno, 2023. "Estimating the Lambda measure in multiple-merger coalescents," Theoretical Population Biology, Elsevier, vol. 154(C), pages 94-101.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Hobolth, Asger & Rivas-González, Iker & Bladt, Mogens & Futschik, Andreas, 2024. "Phase-type distributions in mathematical population genetics: An emerging framework," Theoretical Population Biology, Elsevier, vol. 157(C), pages 14-32.
- Blath, Jochen & Cronjäger, Mathias Christensen & Eldon, Bjarki & Hammer, Matthias, 2016. "The site-frequency spectrum associated with Ξ-coalescents," Theoretical Population Biology, Elsevier, vol. 110(C), pages 36-50.
- Miró Pina, Verónica & Joly, Émilien & Siri-Jégousse, Arno, 2023. "Estimating the Lambda measure in multiple-merger coalescents," Theoretical Population Biology, Elsevier, vol. 154(C), pages 94-101.
- Eldon, Bjarki & Stephan, Wolfgang, 2018. "Evolution of highly fecund haploid populations," Theoretical Population Biology, Elsevier, vol. 119(C), pages 48-56.
- Eldon, Bjarki, 2011. "Estimation of parameters in large offspring number models and ratios of coalescence times," Theoretical Population Biology, Elsevier, vol. 80(1), pages 16-28.
- Etheridge, Alison M. & Griffiths, Robert C. & Taylor, Jesse E., 2010. "A coalescent dual process in a Moran model with genic selection, and the lambda coalescent limit," Theoretical Population Biology, Elsevier, vol. 78(2), pages 77-92.
- Steinrücken, Matthias & Birkner, Matthias & Blath, Jochen, 2013. "Analysis of DNA sequence variation within marine species using Beta-coalescents," Theoretical Population Biology, Elsevier, vol. 87(C), pages 15-24.
- Blath, Jochen & Buzzoni, Eugenio & Koskela, Jere & Wilke Berenguer, Maite, 2020. "Statistical tools for seed bank detection," Theoretical Population Biology, Elsevier, vol. 132(C), pages 1-15.
- Bjarki Eldon, 2023. "Viability Selection at Linked Sites," Mathematics, MDPI, vol. 11(3), pages 1-23, January.
- Backer, David & Billing, Trey, 2024. "Forecasting the prevalence of child acute malnutrition using environmental and conflict conditions as leading indicators," World Development, Elsevier, vol. 176(C).
- David Mouillot & Laure Velez & Camille Albouy & Nicolas Casajus & Joachim Claudet & Vincent Delbar & Rodolphe Devillers & Tom B. Letessier & Nicolas Loiseau & Stéphanie Manel & Laura Mannocci & Jessic, 2024. "The socioeconomic and environmental niche of protected areas reveals global conservation gaps and opportunities," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
- Mariana Oliveira & Luís Torgo & Vítor Santos Costa, 2021. "Evaluation Procedures for Forecasting with Spatiotemporal Data," Mathematics, MDPI, vol. 9(6), pages 1-27, March.
- Dhersin, Jean-Stéphane & Freund, Fabian & Siri-Jégousse, Arno & Yuan, Linglong, 2013. "On the length of an external branch in the Beta-coalescent," Stochastic Processes and their Applications, Elsevier, vol. 123(5), pages 1691-1715.
- Yuanyuan Shi & Junyu Zhao & Xianchong Song & Zuoyu Qin & Lichao Wu & Huili Wang & Jian Tang, 2021. "Hyperspectral band selection and modeling of soil organic matter content in a forest using the Ranger algorithm," PLOS ONE, Public Library of Science, vol. 16(6), pages 1-15, June.
- Riccardo De Bin & Vegard Grødem Stikbakke, 2023. "A boosting first-hitting-time model for survival analysis in high-dimensional settings," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 29(2), pages 420-440, April.
- Marcela Mendoza-Suárez & Turgut Yigit Akyol & Marcin Nadzieja & Stig U. Andersen, 2024. "Increased diversity of beneficial rhizobia enhances faba bean growth," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
- Andreas D. Meid & Lucas Wirbka, 2022. "Can Machine Learning from Real-World Data Support Drug Treatment Decisions? A Prediction Modeling Case for Direct Oral Anticoagulants," Medical Decision Making, , vol. 42(5), pages 587-598, July.
- Bokelmann, Björn & Lessmann, Stefan, 2024. "Improving uplift model evaluation on randomized controlled trial data," European Journal of Operational Research, Elsevier, vol. 313(2), pages 691-707.
- Joel Podgorski & Oliver Kracht & Luis Araguas-Araguas & Stefan Terzer-Wassmuth & Jodie Miller & Ralf Straub & Rolf Kipfer & Michael Berg, 2024. "Groundwater vulnerability to pollution in Africa’s Sahel region," Nature Sustainability, Nature, vol. 7(5), pages 558-567, May.
- Mikula, Lynette Caitlin & Vogl, Claus, 2024. "The expected sample allele frequencies from populations of changing size via orthogonal polynomials," Theoretical Population Biology, Elsevier, vol. 157(C), pages 55-85.
More about this item
Keywords
Multiple merger; Exponential growth; Coalescent; Approximate Bayesian Computation; Genetic diversity statistics; Clade size;All these keywords.
Statistics
Access and download statisticsCorrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:156:y:2021:i:c:s0167947320301468. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.