IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v131y2019icp222-234.html
   My bibliography  Save this article

Two-step sparse boosting for high-dimensional longitudinal data with varying coefficients

Author

Listed:
  • Yue, Mu
  • Li, Jialiang
  • Cheng, Ming-Yen

Abstract

Varying-coefficient models are widely used to model nonparametric interaction and recently adopted to analyze longitudinal data measured repeatedly over time. We focus on high-dimensional longitudinal observations in this article. A novel two-step sparse boosting approach is proposed to carry out the variable selection and the model-based prediction. As a new machine learning tool, boosting provides seamless integration of model estimation and variable selection for complicated regression functions. Specifically, in the first step the sparse boosting technique assuming independence is applied to facilitate an initial estimate of the correlation structure while in the second step the estimated correlation structure is incorporated in the loss function of the sparse boosting algorithm. Extensive numerical examples illustrate the advantage of the two-step sparse boosting method. An application of yeast cell cycle gene expression data is further provided to demonstrate the proposed methodology.

Suggested Citation

  • Yue, Mu & Li, Jialiang & Cheng, Ming-Yen, 2019. "Two-step sparse boosting for high-dimensional longitudinal data with varying coefficients," Computational Statistics & Data Analysis, Elsevier, vol. 131(C), pages 222-234.
    • Handle: RePEc:eee:csdana:v:131:y:2019:i:c:p:222-234
    DOI: 10.1016/j.csda.2018.10.002
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0167947318302470
    Download Restriction: Full text for ScienceDirect subscribers only.
    File URL: https://libkey.io/10.1016/j.csda.2018.10.002?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Hansen M. H & Yu B., 2001. "Model Selection and the Principle of Minimum Description Length," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 746-774, June.
    2. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    3. Manfred Koranda & Alexander Schleiffer & Lukas Endler & Gustav Ammerer, 2000. "Forkhead-like transcription factors recruit Ndd1 to the chromatin of G2/M-specific promoters," Nature, Nature, vol. 406(6791), pages 94-98, July.
    4. Biswas, Munmun & Ghosh, Anil K., 2014. "A nonparametric two-sample test applicable to high dimensional data," Journal of Multivariate Analysis, Elsevier, vol. 123(C), pages 160-171.
    5. Wang Zhu, 2011. "HingeBoost: ROC-Based Boost for Classification and Variable Selection," The International Journal of Biostatistics, De Gruyter, vol. 7(1), pages 1-30, February.
    6. Mondal, Pronoy K. & Biswas, Munmun & Ghosh, Anil K., 2015. "On high dimensional two-sample tests based on nearest neighbors," Journal of Multivariate Analysis, Elsevier, vol. 141(C), pages 168-178.
    7. Naisyin Wang, 2003. "Marginal nonparametric kernel regression accounting for within-subject correlation," Biometrika, Biometrika Trust, vol. 90(1), pages 43-52, March.
    8. Chongshan Zhang & Xiangrong Yin, 2012. "Trending time-varying coefficient market models," Quantitative Finance, Taylor & Francis Journals, vol. 12(10), pages 1533-1546, October.
    9. Wang, Lifeng & Li, Hongzhe & Huang, Jianhua Z., 2008. "Variable Selection in Nonparametric Varying-Coefficient Models for Analysis of Repeated Measurements," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1556-1569.
    10. Samuele CENTORRINO & Jeffrey S. RACINE, 2017. "Semiparametric Varying Coefficient Models with Endogenous Covariates," Annals of Economics and Statistics, GENES, issue 128, pages 261-295.
    11. Xiaochao Xia & Binyan Jiang & Jialiang Li & Wenyang Zhang, 2016. "Low-dimensional confounder adjustment and high-dimensional penalized estimation for survival analysis," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 22(4), pages 547-569, October.
    12. Jianqing Fan & Yunbei Ma & Wei Dai, 2014. "Nonparametric Independence Screening in Sparse Ultra-High-Dimensional Varying Coefficient Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(507), pages 1270-1284, September.
    13. Ye Luo & Martin Spindler & Jannis Kuck, 2016. "High-Dimensional $L_2$Boosting: Rate of Convergence," Papers 1602.08927, arXiv.org, revised Jul 2022.
    14. Cui, Ying & Leng, Chenlei & Sun, Defeng, 2016. "Sparse estimation of high-dimensional correlation matrices," Computational Statistics & Data Analysis, Elsevier, vol. 93(C), pages 390-403.
    15. Chen, Song Xi & Qin, Yingli, 2010. "A Two Sample Test for High Dimensional Data with Applications to Gene-set Testing," MPRA Paper 59642, University Library of Munich, Germany.
    16. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    17. Lin X. & Carroll R. J., 2001. "Semiparametric Regression for Clustered Data Using Generalized Estimating Equations," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1045-1056, September.
    18. Wang, Hansheng & Xia, Yingcun, 2009. "Shrinkage Estimation of the Varying Coefficient Model," Journal of the American Statistical Association, American Statistical Association, vol. 104(486), pages 747-757.
    19. Fan, Jianqing & Huang, Tao & Li, Runze, 2007. "Analysis of Longitudinal Data With Semiparametric Estimation of Covariance Function," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 632-641, June.
    20. Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
    21. Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
    22. Fan, Jianqing & Fan, Yingying & Lv, Jinchi, 2008. "High dimensional covariance matrix estimation using a factor model," Journal of Econometrics, Elsevier, vol. 147(1), pages 186-197, November.
    23. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
    24. Cai, Tony & Liu, Weidong & Luo, Xi, 2011. "A Constrained â„“1 Minimization Approach to Sparse Precision Matrix Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 106(494), pages 594-607.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Xiaorui Zhu & Yichen Qin & Peng Wang, 2023. "Sparsified Simultaneous Confidence Intervals for High-Dimensional Linear Models," Papers 2307.07574, arXiv.org.
    2. Luis Castro-Martín & María del Mar Rueda & Ramón Ferri-García & César Hernando-Tamayo, 2021. "On the Use of Gradient Boosting Methods to Improve the Estimation with Data Obtained with Self-Selection Procedures," Mathematics, MDPI, vol. 9(23), pages 1-23, November.
    3. Huicong Yu & Jiaqi Wu & Weiping Zhang, 2024. "Simultaneous subgroup identification and variable selection for high dimensional data," Computational Statistics, Springer, vol. 39(6), pages 3181-3205, September.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Loann David Denis Desboulets, 2018. "A Review on Variable Selection in Regression Analysis," Econometrics, MDPI, vol. 6(4), pages 1-27, November.
    2. Pei Wang & Shunjie Chen & Sijia Yang, 2022. "Recent Advances on Penalized Regression Models for Biological Data," Mathematics, MDPI, vol. 10(19), pages 1-24, October.
    3. Heng Lian & Xin Chen & Jian-Yi Yang, 2012. "Identification of Partially Linear Structure in Additive Models with an Application to Gene Expression Prediction from Sequences," Biometrics, The International Biometric Society, vol. 68(2), pages 437-445, June.
    4. Yanfang Zhang & Chuanhua Wei & Xiaolin Liu, 2022. "Group Logistic Regression Models with l p,q Regularization," Mathematics, MDPI, vol. 10(13), pages 1-15, June.
    5. Xia, Xiaochao & Yang, Hu & Li, Jialiang, 2016. "Feature screening for generalized varying coefficient models with application to dichotomous responses," Computational Statistics & Data Analysis, Elsevier, vol. 102(C), pages 85-97.
    6. Jie Ding & Vahid Tarokh & Yuhong Yang, 2018. "Model Selection Techniques -- An Overview," Papers 1810.09583, arXiv.org.
    7. Weihua Zhao & Weiping Zhang & Heng Lian, 2020. "Marginal quantile regression for varying coefficient models with longitudinal data," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 72(1), pages 213-234, February.
    8. Hidetoshi Matsui & Toshihiro Misumi, 2015. "Variable selection for varying-coefficient models with the sparse regularization," Computational Statistics, Springer, vol. 30(1), pages 43-55, March.
    9. Xiang-Jie Li & Xue-Jun Ma & Jing-Xiao Zhang, 2017. "Robust feature screening for varying coefficient models via quantile partial correlation," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 80(1), pages 17-49, January.
    10. Guan Yu & Yufeng Liu, 2016. "Sparse Regression Incorporating Graphical Structure Among Predictors," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 707-720, April.
    11. Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
    12. Wang, Christina Dan & Chen, Zhao & Lian, Yimin & Chen, Min, 2022. "Asset selection based on high frequency Sharpe ratio," Journal of Econometrics, Elsevier, vol. 227(1), pages 168-188.
    13. Capanu, Marinela & Giurcanu, Mihai & Begg, Colin B. & Gönen, Mithat, 2023. "Subsampling based variable selection for generalized linear models," Computational Statistics & Data Analysis, Elsevier, vol. 184(C).
    14. Yongjin Li & Qingzhao Zhang & Qihua Wang, 2017. "Penalized estimation equation for an extended single-index model," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 69(1), pages 169-187, February.
    15. Zhang, Tonglin, 2024. "Variables selection using L0 penalty," Computational Statistics & Data Analysis, Elsevier, vol. 190(C).
    16. Takumi Saegusa & Tianzhou Ma & Gang Li & Ying Qing Chen & Mei-Ling Ting Lee, 2020. "Variable Selection in Threshold Regression Model with Applications to HIV Drug Adherence Data," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 12(3), pages 376-398, December.
    17. Yinjun Chen & Hao Ming & Hu Yang, 2024. "Efficient variable selection for high-dimensional multiplicative models: a novel LPRE-based approach," Statistical Papers, Springer, vol. 65(6), pages 3713-3737, August.
    18. Zanhua Yin, 2020. "Variable selection for sparse logistic regression," Metrika: International Journal for Theoretical and Applied Statistics, Springer, vol. 83(7), pages 821-836, October.
    19. Qingliang Fan & Yaqian Wu, 2020. "Endogenous Treatment Effect Estimation with some Invalid and Irrelevant Instruments," Papers 2006.14998, arXiv.org.
    20. Ricardo P. Masini & Marcelo C. Medeiros & Eduardo F. Mendes, 2023. "Machine learning advances for time series forecasting," Journal of Economic Surveys, Wiley Blackwell, vol. 37(1), pages 76-111, February.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:131:y:2019:i:c:p:222-234. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.