IDEAS home Printed from https://ideas.repec.org/a/eee/chsofr/v157y2022ics0960077922000984.html
   My bibliography  Save this article

Data-assimilation and state estimation for contact-based spreading processes using the ensemble kalman filter: Application to COVID-19

Author

Listed:
  • Schaum, A.
  • Bernal-Jaquez, R.
  • Alarcon Ramos, L.

Abstract

The main aim of the present paper is threefold. First, it aims at presenting an extended contact-based model for the description of the spread of contagious diseases in complex networks with consideration of asymptomatic evolutions. Second, it presents a parametrization method of the considered model, including validation with data from the actual spread of COVID-19 in Germany, Mexico and the United States of America. Third, it aims at showcasing the fruitful combination of contact-based network spreading models with a modern state estimation and filtering technique to (i) enable real-time monitoring schemes, and (ii) efficiently deal with dimensionality and stochastic uncertainties. The network model is based on an interpretation of the states of the nodes as (statistical) probability densities samples, where nodes can represent individuals, groups or communities, cities or countries, enabling a wide field of application of the presented approach.

Suggested Citation

  • Schaum, A. & Bernal-Jaquez, R. & Alarcon Ramos, L., 2022. "Data-assimilation and state estimation for contact-based spreading processes using the ensemble kalman filter: Application to COVID-19," Chaos, Solitons & Fractals, Elsevier, vol. 157(C).
    • Handle: RePEc:eee:chsofr:v:157:y:2022:i:c:s0960077922000984
    DOI: 10.1016/j.chaos.2022.111887
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0960077922000984
    Download Restriction: Full text for ScienceDirect subscribers only
    File URL: https://libkey.io/10.1016/j.chaos.2022.111887?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Alakus, Talha Burak & Turkoglu, Ibrahim, 2020. "Comparison of deep learning approaches to predict COVID-19 infection," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    2. Avila-Ponce de León, Ugo & Pérez, Ángel G.C. & Avila-Vales, Eric, 2020. "An SEIARD epidemic model for COVID-19 in Mexico: Mathematical analysis and state-level forecast," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    3. Basnarkov, Lasko, 2021. "SEAIR Epidemic spreading model of COVID-19," Chaos, Solitons & Fractals, Elsevier, vol. 142(C).
    4. Zeroual, Abdelhafid & Harrou, Fouzi & Dairi, Abdelkader & Sun, Ying, 2020. "Deep learning methods for forecasting COVID-19 time-Series data: A Comparative study," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    5. De Simone, Andrea & Piangerelli, Marco, 2020. "A Bayesian approach for monitoring epidemics in presence of undetected cases," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    6. Nkwayep, C. Hameni & Bowong, S. & Tewa, J.J. & Kurths, J., 2020. "Short-term forecasts of the COVID-19 pandemic: a study case of Cameroon," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    7. Nabi, Khondoker Nazmoon, 2020. "Forecasting COVID-19 pandemic: A data-driven analysis," Chaos, Solitons & Fractals, Elsevier, vol. 139(C).
    8. Maleki, Mohsen & Mahmoudi, Mohammad Reza & Heydari, Mohammad Hossein & Pho, Kim-Hung, 2020. "Modeling and forecasting the spread and death rate of coronavirus (COVID-19) in the world using time series models," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    9. Shahid, Farah & Zameer, Aneela & Muneeb, Muhammad, 2020. "Predictions for COVID-19 with deep learning models of LSTM, GRU and Bi-LSTM," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    10. Schaum, Alexander & Bernal Jaquez, Roberto, 2016. "Estimating the state probability distribution for epidemic spreading in complex networks," Applied Mathematics and Computation, Elsevier, vol. 291(C), pages 197-206.
    11. Shastri, Sourabh & Singh, Kuljeet & Kumar, Sachin & Kour, Paramjit & Mansotra, Vibhakar, 2020. "Time series forecasting of Covid-19 using deep learning models: India-USA comparative case study," Chaos, Solitons & Fractals, Elsevier, vol. 140(C).
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Ahed Abugabah & Farah Shahid, 2023. "Intelligent Health Care and Diseases Management System: Multi-Day-Ahead Predictions of COVID-19," Mathematics, MDPI, vol. 11(4), pages 1-19, February.
    2. Iloanusi, Ogechukwu & Ross, Arun, 2021. "Leveraging weather data for forecasting cases-to-mortality rates due to COVID-19," Chaos, Solitons & Fractals, Elsevier, vol. 152(C).
    3. Shruti Sharma & Yogesh Kumar Gupta & Abhinava K. Mishra, 2023. "Analysis and Prediction of COVID-19 Multivariate Data Using Deep Ensemble Learning Methods," IJERPH, MDPI, vol. 20(11), pages 1-23, May.
    4. Masum, Mohammad & Masud, M.A. & Adnan, Muhaiminul Islam & Shahriar, Hossain & Kim, Sangil, 2022. "Comparative study of a mathematical epidemic model, statistical modeling, and deep learning for COVID-19 forecasting and management," Socio-Economic Planning Sciences, Elsevier, vol. 80(C).
    5. Christian Acal & Manuel Escabias & Ana M. Aguilera & Mariano J. Valderrama, 2021. "COVID-19 Data Imputation by Multiple Function-on-Function Principal Component Regression," Mathematics, MDPI, vol. 9(11), pages 1-23, May.
    6. Middya, Asif Iqbal & Roy, Sarbani, 2022. "Spatio-temporal variation of Covid-19 health outcomes in India using deep learning based models," Technological Forecasting and Social Change, Elsevier, vol. 183(C).
    7. Huang, Chiou-Jye & Shen, Yamin & Kuo, Ping-Huan & Chen, Yung-Hsiang, 2022. "Novel spatiotemporal feature extraction parallel deep neural network for forecasting confirmed cases of coronavirus disease 2019," Socio-Economic Planning Sciences, Elsevier, vol. 80(C).
    8. Yong-Ju Jang & Min-Seung Kim & Chan-Ho Lee & Ji-Hye Choi & Jeong-Hee Lee & Sun-Hong Lee & Tae-Eung Sung, 2022. "A Novel Approach on Deep Learning—Based Decision Support System Applying Multiple Output LSTM-Autoencoder: Focusing on Identifying Variations by PHSMs’ Effect over COVID-19 Pandemic," IJERPH, MDPI, vol. 19(11), pages 1-22, June.
    9. Basnarkov, Lasko & Tomovski, Igor & Sandev, Trifce & Kocarev, Ljupco, 2022. "Non-Markovian SIR epidemic spreading model of COVID-19," Chaos, Solitons & Fractals, Elsevier, vol. 160(C).
    10. Antoni Wiliński & Łukasz Kupracz & Aneta Senejko & Grzegorz Chrząstek, 2022. "COVID-19: average time from infection to death in Poland, USA, India and Germany," Quality & Quantity: International Journal of Methodology, Springer, vol. 56(6), pages 4729-4746, December.
    11. Tayarani N., Mohammad-H., 2021. "Applications of artificial intelligence in battling against covid-19: A literature review," Chaos, Solitons & Fractals, Elsevier, vol. 142(C).
    12. Yulan Li & Kun Ma, 2022. "A Hybrid Model Based on Improved Transformer and Graph Convolutional Network for COVID-19 Forecasting," IJERPH, MDPI, vol. 19(19), pages 1-17, September.
    13. Chaharborj, Sarkhosh Seddighi & Nabi, Khondoker Nazmoon & Feng, Koo Lee & Chaharborj, Shahriar Seddighi & Phang, Pei See, 2022. "Controlling COVID-19 transmission with isolation of influential nodes," Chaos, Solitons & Fractals, Elsevier, vol. 159(C).
    14. Basnarkov, Lasko, 2021. "SEAIR Epidemic spreading model of COVID-19," Chaos, Solitons & Fractals, Elsevier, vol. 142(C).
    15. Xiaojin Xie & Kangyang Luo & Zhixiang Yin & Guoqiang Wang, 2021. "Nonlinear Combinational Dynamic Transmission Rate Model and Its Application in Global COVID-19 Epidemic Prediction and Analysis," Mathematics, MDPI, vol. 9(18), pages 1-17, September.
    16. Fawwaz Tawfiq Awamleh & Ala Nihad Bustami, 2022. "Examine the Mediating Role of the Information Technology Capabilities on the Relationship Between Artificial Intelligence and Competitive Advantage During the COVID-19 Pandemic," SAGE Open, , vol. 12(3), pages 21582440221, August.
    17. Chang, Yiming & Tao, YinYing & Shan, Wei & Yu, Xiangyuan, 2023. "Forecasting COVID-19 new cases through the Mixed Generalized Inverse Weibull Distribution and time series model," Chaos, Solitons & Fractals, Elsevier, vol. 175(P2).
    18. Cerqueti, Roy & Deffains-Crapsky, Catherine & Storani, Saverio, 2022. "Similarity-based heterogeneity and cohesiveness of networked companies issuing minibonds," Chaos, Solitons & Fractals, Elsevier, vol. 164(C).
    19. Askar Akaev & Alexander I. Zvyagintsev & Askar Sarygulov & Tessaleno Devezas & Andrea Tick & Yuri Ichkitidze, 2022. "Growth Recovery and COVID-19 Pandemic Model: Comparative Analysis for Selected Emerging Economies," Mathematics, MDPI, vol. 10(19), pages 1-18, October.
    20. Faizeh Hatami & Shi Chen & Rajib Paul & Jean-Claude Thill, 2022. "Simulating and Forecasting the COVID-19 Spread in a U.S. Metropolitan Region with a Spatial SEIR Model," IJERPH, MDPI, vol. 19(23), pages 1-16, November.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:chsofr:v:157:y:2022:i:c:s0960077922000984. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Thayer, Thomas R. (email available below). General contact details of provider: https://www.journals.elsevier.com/chaos-solitons-and-fractals .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.