IDEAS home Printed from https://ideas.repec.org/a/bla/jorssc/v71y2022i5p1721-1752.html
   My bibliography  Save this article

The saturated pairwise interaction Gibbs point process as a joint species distribution model

Author

Listed:
  • Ian Flint
  • Nick Golding
  • Peter Vesk
  • Yan Wang
  • Aihua Xia

Abstract

In an effort to effectively model observed patterns in the spatial configuration of individuals of multiple species in nature, we introduce the saturated pairwise interaction Gibbs point process. Its main strength lies in its ability to model both attraction and repulsion within and between species, over different scales. As such, it is particularly well‐suited to the study of associations in complex ecosystems. Based on the existing literature, we provide an easy to implement fitting procedure as well as a technique to make inference for the model parameters. We also prove that under certain hypotheses the point process is locally stable, which allows us to use the well‐known ‘coupling from the past’ algorithm to draw samples from the model. Different numerical experiments show the robustness of the model. We study three different ecological data sets, demonstrating in each one that our model helps disentangle competing ecological effects on species' distribution.

Suggested Citation

  • Ian Flint & Nick Golding & Peter Vesk & Yan Wang & Aihua Xia, 2022. "The saturated pairwise interaction Gibbs point process as a joint species distribution model," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 71(5), pages 1721-1752, November.
  • Handle: RePEc:bla:jorssc:v:71:y:2022:i:5:p:1721-1752
    DOI: 10.1111/rssc.12596
    as

    Download full text from publisher

    File URL: https://doi.org/10.1111/rssc.12596
    Download Restriction: no

    File URL: https://libkey.io/10.1111/rssc.12596?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Jean-François Coeurjolly & Ege Rubak, 2013. "Fast Covariance Estimation for Innovations Computed from a Spatial Gibbs Point Process," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 40(4), pages 669-684, December.
    2. Adrian Baddeley & Jean-François Coeurjolly & Ege Rubak & Rasmus Waagepetersen, 2014. "Logistic regression for spatial Gibbs point processes," Biometrika, Biometrika Trust, vol. 101(2), pages 377-392.
    3. Daniel, Jeffrey & Horrocks, Julie & Umphrey, Gary J., 2018. "Penalized composite likelihoods for inhomogeneous Gibbs point process models," Computational Statistics & Data Analysis, Elsevier, vol. 124(C), pages 104-116.
    4. T. Rajala & D. J. Murrell & S. C. Olhede, 2018. "Detecting multivariate interactions in spatial point patterns with Gibbs models and variable selection," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 67(5), pages 1237-1273, November.
    5. Rasmus Waagepetersen & Yongtao Guan & Abdollah Jalilian & Jorge Mateu, 2016. "Analysis of multispecies point patterns by using multivariate log-Gaussian Cox processes," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 65(1), pages 77-96, January.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. T. Rajala & D. J. Murrell & S. C. Olhede, 2018. "Detecting multivariate interactions in spatial point patterns with Gibbs models and variable selection," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 67(5), pages 1237-1273, November.
    2. Kristian Bjørn Hessellund & Ganggang Xu & Yongtao Guan & Rasmus Waagepetersen, 2022. "Second‐order semi‐parametric inference for multivariate log Gaussian Cox processes," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 71(1), pages 244-268, January.
    3. Daniel, Jeffrey & Horrocks, Julie & Umphrey, Gary J., 2018. "Penalized composite likelihoods for inhomogeneous Gibbs point process models," Computational Statistics & Data Analysis, Elsevier, vol. 124(C), pages 104-116.
    4. Ondřej Šedivý & Antti Penttinen, 2014. "Intensity estimation for inhomogeneous Gibbs point process with covariates-dependent chemical activity," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 68(3), pages 225-249, August.
    5. Abdollah Jalilian & Jorge Mateu, 2023. "Assessing similarities between spatial point patterns with a Siamese neural network discriminant model," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 17(1), pages 21-42, March.
    6. Eckardt, Matthias & González, Jonatan A. & Mateu, Jorge, 2021. "Graphical modelling and partial characteristics for multitype and multivariate-marked spatio-temporal point processes," Computational Statistics & Data Analysis, Elsevier, vol. 156(C).
    7. María P. Frías & Antoni Torres-Signes & María D. Ruiz-Medina & Jorge Mateu, 2022. "Spatial Cox processes in an infinite-dimensional framework," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(1), pages 175-203, March.
    8. Ottmar Cronie & Mehdi Moradi & Christophe A N Biscio, 2024. "A cross-validation-based statistical theory for point processes," Biometrika, Biometrika Trust, vol. 111(2), pages 625-641.
    9. Jesper Møller & Ninna Vihrs, 2022. "Should We Condition on the Number of Points When Modelling Spatial Point Patterns?," International Statistical Review, International Statistical Institute, vol. 90(3), pages 551-562, December.
    10. Miguel Gómez-Antonio & Stuart Sweeney, 2021. "Testing the role of intra-metropolitan local factors on knowledge-intensive industries’ location choices," The Annals of Regional Science, Springer;Western Regional Science Association, vol. 66(3), pages 699-728, June.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:bla:jorssc:v:71:y:2022:i:5:p:1721-1752. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Wiley Content Delivery (email available below). General contact details of provider: https://edirc.repec.org/data/rssssea.html .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.