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Fully Bayesian spectral methods for imaging data

Author

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  • Brian J. Reich
  • Joseph Guinness
  • Simon N. Vandekar
  • Russell T. Shinohara
  • Ana†Maria Staicu

Abstract

Medical imaging data with thousands of spatially correlated data points are common in many fields. Methods that account for spatial correlation often require cumbersome matrix evaluations which are prohibitive for data of this size, and thus current work has either used low†rank approximations or analyzed data in blocks. We propose a method that accounts for nonstationarity, functional connectivity of distant regions of interest, and local signals, and can be applied to large multi†subject datasets using spectral methods combined with Markov Chain Monte Carlo sampling. We illustrate using simulated data that properly accounting for spatial dependence improves precision of estimates and yields valid statistical inference. We apply the new approach to study associations between cortical thickness and Alzheimer's disease, and find several regions of the cortex where patients with Alzheimer's disease are thinner on average than healthy controls.

Suggested Citation

  • Brian J. Reich & Joseph Guinness & Simon N. Vandekar & Russell T. Shinohara & Ana†Maria Staicu, 2018. "Fully Bayesian spectral methods for imaging data," Biometrics, The International Biometric Society, vol. 74(2), pages 645-652, June.
  • Handle: RePEc:bla:biomet:v:74:y:2018:i:2:p:645-652
    DOI: 10.1111/biom.12782
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    References listed on IDEAS

    as
    1. Guinness, Joseph & Fuentes, Montserrat, 2016. "Isotropic covariance functions on spheres: Some properties and modeling considerations," Journal of Multivariate Analysis, Elsevier, vol. 143(C), pages 143-152.
    2. Carlos M. Carvalho & Nicholas G. Polson & James G. Scott, 2010. "The horseshoe estimator for sparse signals," Biometrika, Biometrika Trust, vol. 97(2), pages 465-480.
    3. Wenguang Sun & Brian J. Reich & T. Tony Cai & Michele Guindani & Armin Schwartzman, 2015. "False discovery control in large-scale spatial multiple testing," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 77(1), pages 59-83, January.
    4. Stefano Castruccio & Joseph Guinness, 2017. "An evolutionary spectrum approach to incorporate large-scale geographical descriptors on global processes," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 66(2), pages 329-344, February.
    5. Hongtu Zhu & Jianqing Fan & Linglong Kong, 2014. "Spatially Varying Coefficient Model for Neuroimaging Data With Jump Discontinuities," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(507), pages 1084-1098, September.
    6. Hakmook Kang & Hernando Ombao & Crystal Linkletter & Nicole Long & David Badre, 2012. "Spatio-Spectral Mixed-Effects Model for Functional Magnetic Resonance Imaging Data," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(498), pages 568-577, June.
    7. Bowman, F. Dubois, 2007. "Spatiotemporal Models for Region of Interest Analyses of Functional Neuroimaging Data," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 442-453, June.
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    Cited by:

    1. Guanzhou Wei & Xiao Liu & Russell Barton, 2024. "An extended PDE‐based statistical spatio‐temporal model that suppresses the Gibbs phenomenon," Environmetrics, John Wiley & Sons, Ltd., vol. 35(2), March.

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