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A human gut microbial gene catalogue established by metagenomic sequencing

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Cited by:

  1. Tim-Fat Shum & Liwen Wang & Jiachi Chiou, 2023. "Impact of Plasticizer on the Intestinal Epithelial Integrity and Tissue-Repairing Ability within Cells in the Proximity of the Human Gut Microbiome," IJERPH, MDPI, vol. 20(3), pages 1-19, January.
  2. Ernestina Hauptfeld & Nikolaos Pappas & Sandra Iwaarden & Basten L. Snoek & Andrea Aldas-Vargas & Bas E. Dutilh & F. A. Bastiaan Meijenfeldt, 2024. "Integrating taxonomic signals from MAGs and contigs improves read annotation and taxonomic profiling of metagenomes," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  3. Eric W. Seabloom & Maria C. Caldeira & Kendi F. Davies & Linda Kinkel & Johannes M. H. Knops & Kimberly J. Komatsu & Andrew S. MacDougall & Georgiana May & Michael Millican & Joslin L. Moore & Luis I., 2023. "Globally consistent response of plant microbiome diversity across hosts and continents to soil nutrients and herbivores," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
  4. Zahraa Al Bander & Marloes Dekker Nitert & Aya Mousa & Negar Naderpoor, 2020. "The Gut Microbiota and Inflammation: An Overview," IJERPH, MDPI, vol. 17(20), pages 1-21, October.
  5. Shuqin Zeng & Dhrati Patangia & Alexandre Almeida & Zhemin Zhou & Dezhi Mu & R. Paul Ross & Catherine Stanton & Shaopu Wang, 2022. "A compendium of 32,277 metagenome-assembled genomes and over 80 million genes from the early-life human gut microbiome," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  6. G. S. Monti & P. Filzmoser, 2022. "Robust logistic zero-sum regression for microbiome compositional data," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 16(2), pages 301-324, June.
  7. Karolina Skonieczna-Żydecka & Ewa Stachowska & Dominika Maciejewska & Karina Ryterska & Joanna Palma & Maja Czerwińska-Rogowska & Mariusz Kaczmarczyk & Anna Gudan & Honorata Mruk & Barbara Świniarska , 2018. "The Digestive Health among Participants of the Woodstock Rock Festival in Poland—A Cross-Sectional Survey," IJERPH, MDPI, vol. 15(10), pages 1-13, October.
  8. Qi, Lijuan & Wu, Jiansong & Chen, Ye & Wen, Qing & Xu, Haitao & Wang, Yuyang, 2020. "Shape-controllable binderless self-supporting hydrogel anode for microbial fuel cells," Renewable Energy, Elsevier, vol. 156(C), pages 1325-1335.
  9. Barbara Emmenegger & Julien Massoni & Christine M. Pestalozzi & Miriam Bortfeld-Miller & Benjamin A. Maier & Julia A. Vorholt, 2023. "Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  10. Lara S. Franco & Danielle F. Shanahan & Richard A. Fuller, 2017. "A Review of the Benefits of Nature Experiences: More Than Meets the Eye," IJERPH, MDPI, vol. 14(8), pages 1-29, August.
  11. Efrat Muller & Itamar Shiryan & Elhanan Borenstein, 2024. "Multi-omic integration of microbiome data for identifying disease-associated modules," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  12. Doris Vandeputte & Lindsey Commer & Raul Y. Tito & Gunter Kathagen & João Sabino & Séverine Vermeire & Karoline Faust & Jeroen Raes, 2021. "Temporal variability in quantitative human gut microbiome profiles and implications for clinical research," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
  13. Fiona B. Tamburini & Dylan Maghini & Ovokeraye H. Oduaran & Ryan Brewster & Michaella R. Hulley & Venesa Sahibdeen & Shane A. Norris & Stephen Tollman & Kathleen Kahn & Ryan G. Wagner & Alisha N. Wade, 2022. "Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
  14. Julie Reygner & Claire Joly Condette & Aurélia Bruneau & Stéphane Delanaud & Larbi Rhazi & Flore Depeint & Latifa Abdennebi-Najar & Veronique Bach & Camille Mayeur & Hafida Khorsi-Cauet, 2016. "Changes in Composition and Function of Human Intestinal Microbiota Exposed to Chlorpyrifos in Oil as Assessed by the SHIME ® Model," IJERPH, MDPI, vol. 13(11), pages 1-18, November.
  15. Chiranjib Chakraborty & Ashish Ranjan Sharma & Garima Sharma & Manojit Bhattacharya & Sang-Soo Lee, 2023. "Exploring the status of global terrestrial and aquatic microbial diversity through ‘Biodiversity Informatics’," Environment, Development and Sustainability: A Multidisciplinary Approach to the Theory and Practice of Sustainable Development, Springer, vol. 25(10), pages 10567-10598, October.
  16. Xiaoji (Christine) Liu & Kevin D. Floate & Monika A. Gorzelak & Devin B. Holman & Scott Hrycauk & Hiroshi Kubota & Newton Lupwayi & Jonathan A. D. Neilson & Rodrigo Ortega Polo & Renée M. Petri & Lan , 2023. "Prairie Agroecosystems: Interconnected Microbiomes of Livestock, Soil and Insects," Agriculture, MDPI, vol. 13(2), pages 1-28, January.
  17. Ziye Wang & Ronghui You & Haitao Han & Wei Liu & Fengzhu Sun & Shanfeng Zhu, 2024. "Effective binning of metagenomic contigs using contrastive multi-view representation learning," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  18. Mohammed Y. Refai & Aala A. Abulfaraj & Israa J. Hakeem & Nehad A. Shaer & Mashael D. Alqahtani & Maryam M. Alomran & Nahaa M. Alotaibi & Hana S. Sonbol & Abdulrahman M. Alhashimi & Nouf S. Al-Abbas &, 2023. "Rhizobiome Signature and Its Alteration Due to Watering in the Wild Plant Moringa oleifera," Sustainability, MDPI, vol. 15(3), pages 1-25, February.
  19. Narongrit Sritana & Atitaya Phungpinij, 2024. "Analysis of Oral Microbiota in Elderly Thai Patients with Alzheimer’s Disease and Mild Cognitive Impairment," IJERPH, MDPI, vol. 21(9), pages 1-15, September.
  20. Emidio Scarpellini & Emanuele Rinninella & Martina Basilico & Esther Colomier & Carlo Rasetti & Tiziana Larussa & Pierangelo Santori & Ludovico Abenavoli, 2021. "From Pre- and Probiotics to Post-Biotics: A Narrative Review," IJERPH, MDPI, vol. 19(1), pages 1-14, December.
  21. Laura Sanchis-Artero & Juan Francisco Martínez-Blanch & Sergio Manresa-Vera & Ernesto Cortés-Castell & Josefa Rodriguez-Morales & Xavier Cortés-Rizo, 2020. "Evaluation of Changes in Gut Microbiota in Patients with Crohn’s Disease after Anti-Tnfα Treatment: Prospective Multicenter Observational Study," IJERPH, MDPI, vol. 17(14), pages 1-14, July.
  22. Pil Soo Kim & Yeo-Rang Lee & Yong-Su Kwon & Jin-Woo Bae & Sung-Jae Lee & Young-Seuk Park, 2021. "Differences of Gut Microbiota in the Freshwater Blackworm ( Lumbriculus variegatus : Oligochaeta) in Two Different Habitat Conditions," IJERPH, MDPI, vol. 18(19), pages 1-11, September.
  23. Lharbi Dridi & Fernando Altamura & Emmanuel Gonzalez & Olivia Lui & Ryszard Kubinski & Reilly Pidgeon & Adrian Montagut & Jasmine Chong & Jianguo Xia & Corinne F. Maurice & Bastien Castagner, 2023. "Identifying glycan consumers in human gut microbiota samples using metabolic labeling coupled with fluorescence-activated cell sorting," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
  24. Ashwag Shami & Rewaa S. Jalal & Ruba A. Ashy & Haneen W. Abuauf & Lina Baz & Mohammed Y. Refai & Aminah A. Barqawi & Hanadi M. Baeissa & Manal A. Tashkandi & Sahar Alshareef & Aala A. Abulfaraj, 2022. "Use of Metagenomic Whole Genome Shotgun Sequencing Data in Taxonomic Assignment of Dipterygium glaucum Rhizosphere and Surrounding Bulk Soil Microbiomes, and Their Response to Watering," Sustainability, MDPI, vol. 14(14), pages 1-21, July.
  25. Georges P. Schmartz & Jacqueline Rehner & Madline P. Gund & Verena Keller & Leidy-Alejandra G. Molano & Stefan Rupf & Matthias Hannig & Tim Berger & Elias Flockerzi & Berthold Seitz & Sara Fleser & Sa, 2024. "Decoding the diagnostic and therapeutic potential of microbiota using pan-body pan-disease microbiomics," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
  26. Alex E. Mohr & Karen L. Sweazea & Devin A. Bowes & Paniz Jasbi & Corrie M. Whisner & Dorothy D. Sears & Rosa Krajmalnik-Brown & Yan Jin & Haiwei Gu & Judith Klein-Seetharaman & Karen M. Arciero & Eric, 2024. "Gut microbiome remodeling and metabolomic profile improves in response to protein pacing with intermittent fasting versus continuous caloric restriction," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
  27. Wei Zhou & Wen-hui Wu & Zi-lin Si & Hui-ling Liu & Hanyu Wang & Hong Jiang & Ya-fang Liu & Raphael N. Alolga & Cheng Chen & Shi-jia Liu & Xue-yan Bian & Jin-jun Shan & Jing Li & Ning-hua Tan & Zhi-hao, 2022. "The gut microbe Bacteroides fragilis ameliorates renal fibrosis in mice," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
  28. Shaojun Pan & Chengkai Zhu & Xing-Ming Zhao & Luis Pedro Coelho, 2022. "A deep siamese neural network improves metagenome-assembled genomes in microbiome datasets across different environments," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
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