IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-39179-w.html
   My bibliography  Save this article

Globally consistent response of plant microbiome diversity across hosts and continents to soil nutrients and herbivores

Author

Listed:
  • Eric W. Seabloom

    (University of Minnesota)

  • Maria C. Caldeira

    (University of Lisbon)

  • Kendi F. Davies

    (University of Colorado)

  • Linda Kinkel

    (University of Minnesota)

  • Johannes M. H. Knops

    (Xi’an Jiaotong-Liverpool University)

  • Kimberly J. Komatsu

    (Smithsonian Environmental Research Center)

  • Andrew S. MacDougall

    (University of Guelph)

  • Georgiana May

    (University of Minnesota)

  • Michael Millican

    (University of Minnesota)

  • Joslin L. Moore

    (Arthur Rylah Institute for Environmental Research
    Monash University
    The University of Melbourne)

  • Luis I. Perez

    (Catedra ´ de Ecología)

  • Anita J. Porath-Krause

    (University of Minnesota)

  • Sally A. Power

    (Hawkesbury Institute for the Environment)

  • Suzanne M. Prober

    (CSIRO Environment)

  • Anita C. Risch

    (Snow and Landscape Research)

  • Carly Stevens

    (Lancaster University)

  • Elizabeth T. Borer

    (University of Minnesota)

Abstract

All multicellular organisms host a diverse microbiome composed of microbial pathogens, mutualists, and commensals, and changes in microbiome diversity or composition can alter host fitness and function. Nonetheless, we lack a general understanding of the drivers of microbiome diversity, in part because it is regulated by concurrent processes spanning scales from global to local. Global-scale environmental gradients can determine variation in microbiome diversity among sites, however an individual host’s microbiome also may reflect its local micro-environment. We fill this knowledge gap by experimentally manipulating two potential mediators of plant microbiome diversity (soil nutrient supply and herbivore density) at 23 grassland sites spanning global-scale gradients in soil nutrients, climate, and plant biomass. Here we show that leaf-scale microbiome diversity in unmanipulated plots depended on the total microbiome diversity at each site, which was highest at sites with high soil nutrients and plant biomass. We also found that experimentally adding soil nutrients and excluding herbivores produced concordant results across sites, increasing microbiome diversity by increasing plant biomass, which created a shaded microclimate. This demonstration of consistent responses of microbiome diversity across a wide range of host species and environmental conditions suggests the possibility of a general, predictive understanding of microbiome diversity.

Suggested Citation

  • Eric W. Seabloom & Maria C. Caldeira & Kendi F. Davies & Linda Kinkel & Johannes M. H. Knops & Kimberly J. Komatsu & Andrew S. MacDougall & Georgiana May & Michael Millican & Joslin L. Moore & Luis I., 2023. "Globally consistent response of plant microbiome diversity across hosts and continents to soil nutrients and herbivores," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39179-w
    DOI: 10.1038/s41467-023-39179-w
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-39179-w
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-39179-w?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. E. T. Borer & W. S. Harpole & P. B. Adler & C. A. Arnillas & M. N. Bugalho & M. W. Cadotte & M. C. Caldeira & S. Campana & C. R. Dickman & T. L. Dickson & I. Donohue & A. Eskelinen & J. L. Firn & P. G, 2020. "Nutrients cause grassland biomass to outpace herbivory," Nature Communications, Nature, vol. 11(1), pages 1-8, December.
    2. Ylva Lekberg & Carlos A. Arnillas & Elizabeth T. Borer & Lorinda S. Bullington & Noah Fierer & Peter G. Kennedy & Jonathan W. Leff & Angela D. Luis & Eric W. Seabloom & Jeremiah A. Henning, 2021. "Nitrogen and phosphorus fertilization consistently favor pathogenic over mutualistic fungi in grassland soils," Nature Communications, Nature, vol. 12(1), pages 1-8, December.
    3. Junjie Qin & Ruiqiang Li & Jeroen Raes & Manimozhiyan Arumugam & Kristoffer Solvsten Burgdorf & Chaysavanh Manichanh & Trine Nielsen & Nicolas Pons & Florence Levenez & Takuji Yamada & Daniel R. Mende, 2010. "A human gut microbial gene catalogue established by metagenomic sequencing," Nature, Nature, vol. 464(7285), pages 59-65, March.
    4. Maggie R. Wagner & Derek S Lundberg & Tijana G. del Rio & Susannah G. Tringe & Jeffery L. Dangl & Thomas Mitchell-Olds, 2016. "Host genotype and age shape the leaf and root microbiomes of a wild perennial plant," Nature Communications, Nature, vol. 7(1), pages 1-15, November.
    5. Elizabeth T. Borer & Eric W. Seabloom & Daniel S. Gruner & W. Stanley Harpole & Helmut Hillebrand & Eric M. Lind & Peter B. Adler & Juan Alberti & T. Michael Anderson & Jonathan D. Bakker & Lori Biede, 2014. "Herbivores and nutrients control grassland plant diversity via light limitation," Nature, Nature, vol. 508(7497), pages 517-520, April.
    6. Ian J. Wright & Peter B. Reich & Mark Westoby & David D. Ackerly & Zdravko Baruch & Frans Bongers & Jeannine Cavender-Bares & Terry Chapin & Johannes H. C. Cornelissen & Matthias Diemer & Jaume Flexas, 2004. "The worldwide leaf economics spectrum," Nature, Nature, vol. 428(6985), pages 821-827, April.
    7. Eric W. Seabloom & Elizabeth T. Borer & Yvonne M. Buckley & Elsa E. Cleland & Kendi F. Davies & Jennifer Firn & W. Stanley Harpole & Yann Hautier & Eric M. Lind & Andrew S. MacDougall & John L. Orrock, 2015. "Plant species’ origin predicts dominance and response to nutrient enrichment and herbivores in global grasslands," Nature Communications, Nature, vol. 6(1), pages 1-8, November.
    8. O. A. Chadwick & L. A. Derry & P. M. Vitousek & B. J. Huebert & L. O. Hedin, 1999. "Changing sources of nutrients during four million years of ecosystem development," Nature, Nature, vol. 397(6719), pages 491-497, February.
    9. Christoph Scherber & Nico Eisenhauer & Wolfgang W. Weisser & Bernhard Schmid & Winfried Voigt & Markus Fischer & Ernst-Detlef Schulze & Christiane Roscher & Alexandra Weigelt & Eric Allan & Holger Beß, 2010. "Bottom-up effects of plant diversity on multitrophic interactions in a biodiversity experiment," Nature, Nature, vol. 468(7323), pages 553-556, November.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Margot Neyret & Gaëtane Provost & Andrea Larissa Boesing & Florian D. Schneider & Dennis Baulechner & Joana Bergmann & Franciska T. Vries & Anna Maria Fiore-Donno & Stefan Geisen & Kezia Goldmann & An, 2024. "A slow-fast trait continuum at the whole community level in relation to land-use intensification," Nature Communications, Nature, vol. 15(1), pages 1-23, December.
    2. Anu Eskelinen & Maria-Theresa Jessen & Hector A. Bahamonde & Jonathan D. Bakker & Elizabeth T. Borer & Maria C. Caldeira & W. Stanley Harpole & Meiyu Jia & Luciola S. Lannes & Carla Nogueira & Harry O, 2023. "Herbivory and nutrients shape grassland soil seed banks," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    3. Fanfan Ju & Liuzhu Chen & Jiejun Zheng & Zhanqiang Chen & Xiaoli Wang & Xinxing Xia, 2022. "Elevation-Dependent Fluctuations of the Soil Properties in a Subtropical Forest of Central China," Sustainability, MDPI, vol. 14(23), pages 1-18, November.
    4. Xiang Li & Wenhao Hu & Zhenrong Yu, 2021. "Importance of Soil Organic Matter and the Species Pool for Local Species Richness in Montane Ecosystems," Sustainability, MDPI, vol. 13(19), pages 1-14, September.
    5. C. E. Dubé & M. Ziegler & A. Mercière & E. Boissin & S. Planes & C. A. -F. Bourmaud & C. R. Voolstra, 2021. "Naturally occurring fire coral clones demonstrate a genetic and environmental basis of microbiome composition," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    6. Huihui Ding & Wensheng Chen & Jiangrong Li & Fangwei Fu & Yueyao Li & Siying Xiao, 2023. "Physiological Characteristics and Cold Resistance of Five Woody Plants in Treeline Ecotone of Sygera Mountains," Sustainability, MDPI, vol. 15(4), pages 1-11, February.
    7. Petter, Gunnar & Kreft, Holger & Ong, Yongzhi & Zotz, Gerhard & Cabral, Juliano Sarmento, 2021. "Modelling the long-term dynamics of tropical forests: From leaf traits to whole-tree growth patterns," Ecological Modelling, Elsevier, vol. 460(C).
    8. Ashwag Shami & Rewaa S. Jalal & Ruba A. Ashy & Haneen W. Abuauf & Lina Baz & Mohammed Y. Refai & Aminah A. Barqawi & Hanadi M. Baeissa & Manal A. Tashkandi & Sahar Alshareef & Aala A. Abulfaraj, 2022. "Use of Metagenomic Whole Genome Shotgun Sequencing Data in Taxonomic Assignment of Dipterygium glaucum Rhizosphere and Surrounding Bulk Soil Microbiomes, and Their Response to Watering," Sustainability, MDPI, vol. 14(14), pages 1-21, July.
    9. Maria Wanic & Mariola Parzonka, 2023. "Assessing the Role of Crop Rotation in Shaping Foliage Characteristics and Leaf Gas Exchange Parameters for Winter Wheat," Agriculture, MDPI, vol. 13(5), pages 1-20, April.
    10. Daijun Liu & Adriane Esquivel-Muelbert & Nezha Acil & Julen Astigarraga & Emil Cienciala & Jonas Fridman & Georges Kunstler & Thomas J. Matthews & Paloma Ruiz-Benito & Jonathan P. Sadler & Mart-Jan Sc, 2024. "Mapping multi-dimensional variability in water stress strategies across temperate forests," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    11. Najeeb Al-Amin Iddris & Greta Formaglio & Carola Paul & Volker Groß & Guantao Chen & Andres Angulo-Rubiano & Dirk Berkelmann & Fabian Brambach & Kevin F. A. Darras & Valentyna Krashevska & Anton Potap, 2023. "Mechanical weeding enhances ecosystem multifunctionality and profit in industrial oil palm," Nature Sustainability, Nature, vol. 6(6), pages 683-695, June.
    12. Guangzhou Wang & Haley M. Burrill & Laura Y. Podzikowski & Maarten B. Eppinga & Fusuo Zhang & Junling Zhang & Peggy A. Schultz & James D. Bever, 2023. "Dilution of specialist pathogens drives productivity benefits from diversity in plant mixtures," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    13. Adam R. Martin & Rachel O. Mariani & Kimberley A. Cathline & Michael Duncan & Nicholas J. Paroshy & Gavin Robertson, 2022. "Soil Compaction Drives an Intra-Genotype Leaf Economics Spectrum in Wine Grapes," Agriculture, MDPI, vol. 12(10), pages 1-16, October.
    14. Pedro Daleo & Juan Alberti & Enrique J. Chaneton & Oscar Iribarne & Pedro M. Tognetti & Jonathan D. Bakker & Elizabeth T. Borer & Martín Bruschetti & Andrew S. MacDougall & Jesús Pascual & Mahesh Sank, 2023. "Environmental heterogeneity modulates the effect of plant diversity on the spatial variability of grassland biomass," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    15. Yeonggeun Song & Sukwoo Kim & Haeun Koo & Hyeonhwa Kim & Kidae Kim & Jaeuk Lee & Sujin Jang & Kyeong Cheol Lee, 2023. "Assessing the Suitability of Sediment Soil to Be Reused by Different Soil Treatments for Forest Agriculture," Sustainability, MDPI, vol. 15(15), pages 1-18, July.
    16. Emidio Scarpellini & Emanuele Rinninella & Martina Basilico & Esther Colomier & Carlo Rasetti & Tiziana Larussa & Pierangelo Santori & Ludovico Abenavoli, 2021. "From Pre- and Probiotics to Post-Biotics: A Narrative Review," IJERPH, MDPI, vol. 19(1), pages 1-14, December.
    17. Wei Zhou & Wen-hui Wu & Zi-lin Si & Hui-ling Liu & Hanyu Wang & Hong Jiang & Ya-fang Liu & Raphael N. Alolga & Cheng Chen & Shi-jia Liu & Xue-yan Bian & Jin-jun Shan & Jing Li & Ning-hua Tan & Zhi-hao, 2022. "The gut microbe Bacteroides fragilis ameliorates renal fibrosis in mice," Nature Communications, Nature, vol. 13(1), pages 1-19, December.
    18. Stephan Kambach & Francesco Maria Sabatini & Fabio Attorre & Idoia Biurrun & Gerhard Boenisch & Gianmaria Bonari & Andraž Čarni & Maria Laura Carranza & Alessandro Chiarucci & Milan Chytrý & Jürgen De, 2023. "Climate-trait relationships exhibit strong habitat specificity in plant communities across Europe," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    19. Yi Lei & Jing Gao & Qi Wang & Weiying Zeng & Dhungana Diwakar & Yaodan Zhang & Xianming Tan & Zudong Sun & Feng Yang & Wenyu Yang, 2024. "Cyclic Electron Flow Alleviates the Stress of Light Fluctuation on Soybean Photosynthesis," Agriculture, MDPI, vol. 14(7), pages 1-13, June.
    20. Xinli Chen & Peter B. Reich & Anthony R. Taylor & Zhengfeng An & Scott X. Chang, 2024. "Resource availability enhances positive tree functional diversity effects on carbon and nitrogen accrual in natural forests," Nature Communications, Nature, vol. 15(1), pages 1-11, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39179-w. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.