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Exploring the status of global terrestrial and aquatic microbial diversity through ‘Biodiversity Informatics’

Author

Listed:
  • Chiranjib Chakraborty

    (Adamas University)

  • Ashish Ranjan Sharma

    (Hallym University-Chuncheon Sacred Heart Hospital)

  • Garima Sharma

    (Kangwon National University)

  • Manojit Bhattacharya

    (Fakir Mohan University)

  • Sang-Soo Lee

    (Hallym University-Chuncheon Sacred Heart Hospital)

Abstract

Biological scientists have established ‘Biodiversity Informatics’ to map the global diversity of biological organisms by using cutting-edge bioinformatics tools. This review depicts an overview of microbial diversity's status worldwide and discusses microbial biodiversity in the marine and terrestrial ecosystems. The study shows how the ‘Biodiversity Informatics’ could help scientists to map the variety of microbial species recorded in terrestrial and marine habitats. The status of microbial biodiversity globally is also discussed. Besides, it also illustrates how biologists could utilize databases to explore not only microbial biodiversity but also various species of fauna and flora. We have represented microbial biodiversity informatics and its growth, tools and technologies, data management, digital taxonomy for biodiversity informatics to categorize microbial species. Moreover, molecular biodiversity informatics and current progress of biodiversity informatics have also been discussed. Finally, we have also depicted the policy and managerial implications and research gaps in this direction. Our article will lead to the novel path, which will show the interdisciplinary approaches of biodiversity informatics with the support of metagenomics and genomics.

Suggested Citation

  • Chiranjib Chakraborty & Ashish Ranjan Sharma & Garima Sharma & Manojit Bhattacharya & Sang-Soo Lee, 2023. "Exploring the status of global terrestrial and aquatic microbial diversity through ‘Biodiversity Informatics’," Environment, Development and Sustainability: A Multidisciplinary Approach to the Theory and Practice of Sustainable Development, Springer, vol. 25(10), pages 10567-10598, October.
    • Handle: RePEc:spr:endesu:v:25:y:2023:i:10:d:10.1007_s10668-022-02539-5
    DOI: 10.1007/s10668-022-02539-5
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    1. Anjali Nayar, 2010. "World gets 2020 vision for conservation," Nature, Nature, vol. 468(7320), pages 14-14, November.
    2. Junjie Qin & Ruiqiang Li & Jeroen Raes & Manimozhiyan Arumugam & Kristoffer Solvsten Burgdorf & Chaysavanh Manichanh & Trine Nielsen & Nicolas Pons & Florence Levenez & Takuji Yamada & Daniel R. Mende, 2010. "A human gut microbial gene catalogue established by metagenomic sequencing," Nature, Nature, vol. 464(7285), pages 59-65, March.
    3. Aravind Natarajan & Ami S. Bhatt, 2020. "Microbes and microbiomes in 2020 and beyond," Nature Communications, Nature, vol. 11(1), pages 1-3, December.
    4. Manuel Delgado-Baquerizo & Fernando T. Maestre & Peter B. Reich & Thomas C. Jeffries & Juan J. Gaitan & Daniel Encinar & Miguel Berdugo & Colin D. Campbell & Brajesh K. Singh, 2016. "Microbial diversity drives multifunctionality in terrestrial ecosystems," Nature Communications, Nature, vol. 7(1), pages 1-8, April.
    5. Congying Chen & Yunyan Zhou & Hao Fu & Xinwei Xiong & Shaoming Fang & Hui Jiang & Jinyuan Wu & Hui Yang & Jun Gao & Lusheng Huang, 2021. "Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
    6. Alexandre Almeida & Alex L. Mitchell & Miguel Boland & Samuel C. Forster & Gregory B. Gloor & Aleksandra Tarkowska & Trevor D. Lawley & Robert D. Finn, 2019. "A new genomic blueprint of the human gut microbiota," Nature, Nature, vol. 568(7753), pages 499-504, April.
    Full references (including those not matched with items on IDEAS)

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