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Genome-wide atlas of gene expression in the adult mouse brain
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- Harry Carey & Michael Pegios & Lewis Martin & Chris Saleeba & Anita J. Turner & Nicholas A. Everett & Ingvild E. Bjerke & Maja A. Puchades & Jan G. Bjaalie & Simon McMullan, 2023. "DeepSlice: rapid fully automatic registration of mouse brain imaging to a volumetric atlas," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
- Xinyi Zhang & Xiao Wang & G. V. Shivashankar & Caroline Uhler, 2022. "Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Duy Pham & Xiao Tan & Brad Balderson & Jun Xu & Laura F. Grice & Sohye Yoon & Emily F. Willis & Minh Tran & Pui Yeng Lam & Arti Raghubar & Priyakshi Kalita-de Croft & Sunil Lakhani & Jana Vukovic & Ma, 2023. "Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues," Nature Communications, Nature, vol. 14(1), pages 1-25, December.
- Adeeti Aggarwal & Connor Brennan & Jennifer Luo & Helen Chung & Diego Contreras & Max B. Kelz & Alex Proekt, 2022. "Visual evoked feedforward–feedback traveling waves organize neural activity across the cortical hierarchy in mice," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- Thomas M. Goralski & Lindsay Meyerdirk & Libby Breton & Laura Brasseur & Kevin Kurgat & Daniella DeWeerd & Lisa Turner & Katelyn Becker & Marie Adams & Daniel J. Newhouse & Michael X. Henderson, 2024. "Spatial transcriptomics reveals molecular dysfunction associated with cortical Lewy pathology," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Juexin Wang & Jinpu Li & Skyler T. Kramer & Li Su & Yuzhou Chang & Chunhui Xu & Michael T. Eadon & Krzysztof Kiryluk & Qin Ma & Dong Xu, 2023. "Dimension-agnostic and granularity-based spatially variable gene identification using BSP," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Lulu Shang & Xiang Zhou, 2022. "Spatially aware dimension reduction for spatial transcriptomics," Nature Communications, Nature, vol. 13(1), pages 1-22, December.
- Xiaobo Mao & Hao Gu & Donghoon Kim & Yasuyoshi Kimura & Ning Wang & Enquan Xu & Ramhari Kumbhar & Xiaotian Ming & Haibo Wang & Chan Chen & Shengnan Zhang & Chunyu Jia & Yuqing Liu & Hetao Bian & Senth, 2024. "Aplp1 interacts with Lag3 to facilitate transmission of pathologic α-synuclein," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Andrew Jones & Diana Cai & Didong Li & Barbara E. Engelhardt, 2024. "Optimizing the design of spatial genomic studies," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
- Amanda M. Perozzo & Jochen Schwenk & Aichurok Kamalova & Terunaga Nakagawa & Bernd Fakler & Derek Bowie, 2023. "GSG1L-containing AMPA receptor complexes are defined by their spatiotemporal expression, native interactome and allosteric sites," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Wei Liu & Xu Liao & Ziye Luo & Yi Yang & Mai Chan Lau & Yuling Jiao & Xingjie Shi & Weiwei Zhai & Hongkai Ji & Joe Yeong & Jin Liu, 2023. "Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
- Yingfeng Tao & Xiaoliu Zhou & Leqiang Sun & Da Lin & Huaiyuan Cai & Xi Chen & Wei Zhou & Bing Yang & Zhe Hu & Jing Yu & Jing Zhang & Xiaoqing Yang & Fang Yang & Bang Shen & Wenbao Qi & Zhenfang Fu & J, 2023. "Highly efficient and robust π-FISH rainbow for multiplexed in situ detection of diverse biomolecules," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- S. Vickovic & B. Lötstedt & J. Klughammer & S. Mages & Å Segerstolpe & O. Rozenblatt-Rosen & A. Regev, 2022. "SM-Omics is an automated platform for high-throughput spatial multi-omics," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Brendan F. Miller & Feiyang Huang & Lyla Atta & Arpan Sahoo & Jean Fan, 2022. "Reference-free cell type deconvolution of multi-cellular pixel-resolution spatially resolved transcriptomics data," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
- Dongsheng Xiao & Brandon J. Forys & Matthieu P. Vanni & Timothy H. Murphy, 2021. "MesoNet allows automated scaling and segmentation of mouse mesoscale cortical maps using machine learning," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
- Denis Abu Sammour & James L. Cairns & Tobias Boskamp & Christian Marsching & Tobias Kessler & Carina Ramallo Guevara & Verena Panitz & Ahmed Sadik & Jonas Cordes & Stefan Schmidt & Shad A. Mohammed & , 2023. "Spatial probabilistic mapping of metabolite ensembles in mass spectrometry imaging," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Stuart Oldham & Gareth Ball, 2023. "A phylogenetically-conserved axis of thalamocortical connectivity in the human brain," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- P. Bielefeld & A. Martirosyan & S. Martín-Suárez & A. Apresyan & G. F. Meerhoff & F. Pestana & S. Poovathingal & N. Reijner & W. Koning & R. A. Clement & I. Veen & E. M. Toledo & O. Polzer & I. Durá &, 2024. "Traumatic brain injury promotes neurogenesis at the cost of astrogliogenesis in the adult hippocampus of male mice," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Ayelet M. Rosenberg & Manish Saggar & Anna S. Monzel & Jack Devine & Peter Rogu & Aaron Limoges & Alex Junker & Carmen Sandi & Eugene V. Mosharov & Dani Dumitriu & Christoph Anacker & Martin Picard, 2023. "Brain mitochondrial diversity and network organization predict anxiety-like behavior in male mice," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
- Fangfang Qu & Wenjia Li & Jian Xu & Ruifang Zhang & Jincan Ke & Xiaodie Ren & Xiaogao Meng & Lexin Qin & Jingna Zhang & Fangru Lu & Xin Zhou & Xi Luo & Zhen Zhang & Minhan Wang & Guangming Wu & Duanqi, 2023. "Three-dimensional molecular architecture of mouse organogenesis," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
- Yi Han & Lin Ai & Lingzhen Song & Yu Zhou & Dandan Chen & Sha Sha & Ran Ji & Qize Li & Qingyang Bu & Xiangyu Pan & Xiaojing Zhai & Mengqiao Cui & Jiawen Duan & Junxia Yang & Dipesh Chaudhury & Ankang , 2024. "Midbrain glutamatergic circuit mechanism of resilience to socially transferred allodynia in male mice," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Léa J. Becker & Clémentine Fillinger & Robin Waegaert & Sarah H. Journée & Pierre Hener & Beyza Ayazgok & Muris Humo & Meltem Karatas & Maxime Thouaye & Mithil Gaikwad & Laetitia Degiorgis & Marie des, 2023. "The basolateral amygdala-anterior cingulate pathway contributes to depression-like behaviors and comorbidity with chronic pain behaviors in male mice," Nature Communications, Nature, vol. 14(1), pages 1-23, December.
- Julian Cheron & Leonardo Beccari & Perrine Hagué & Romain Icick & Chloé Despontin & Teresa Carusone & Matthieu Defrance & Sagar Bhogaraju & Elena Martin-Garcia & Roberto Capellan & Rafael Maldonado & , 2023. "USP7/Maged1-mediated H2A monoubiquitination in the paraventricular thalamus: an epigenetic mechanism involved in cocaine use disorder," Nature Communications, Nature, vol. 14(1), pages 1-18, December.
- Justin H. Trotter & Cosmos Yuqi Wang & Peng Zhou & George Nakahara & Thomas C. Südhof, 2023. "A combinatorial code of neurexin-3 alternative splicing controls inhibitory synapses via a trans-synaptic dystroglycan signaling loop," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
- Manvendra Singh & Ying Zhao & Vinicius Daguano Gastaldi & Sonja M. Wojcik & Yasmina Curto & Riki Kawaguchi & Ricardo M. Merino & Laura Fernandez Garcia-Agudo & Holger Taschenberger & Nils Brose & Dani, 2023. "Erythropoietin re-wires cognition-associated transcriptional networks," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Deepanjali Dwivedi & Dimitri Dumontier & Mia Sherer & Sherry Lin & Andrea M. C. Mirow & Yanjie Qiu & Qing Xu & Samuel A. Liebman & Djeckby Joseph & Sandeep R. Datta & Gord Fishell & Gabrielle Pouchelo, 2024. "Metabotropic signaling within somatostatin interneurons controls transient thalamocortical inputs during development," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Jun Ding & Jian Ji & Zachary Rabow & Tong Shen & Jacob Folz & Christopher R. Brydges & Sili Fan & Xinchen Lu & Sajjan Mehta & Megan R. Showalter & Ying Zhang & Renee Araiza & Lynette R. Bower & K. C. , 2021. "A metabolome atlas of the aging mouse brain," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
- Lisa-Marie Appel & Vedran Franke & Melania Bruno & Irina Grishkovskaya & Aiste Kasiliauskaite & Tanja Kaufmann & Ursula E. Schoeberl & Martin G. Puchinger & Sebastian Kostrhon & Carmen Ebenwaldner & M, 2021. "PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC," Nature Communications, Nature, vol. 12(1), pages 1-24, December.
- Qiang Liu & Benjamin J. Bell & Dong Won Kim & Sang Soo Lee & Mehmet F. Keles & Qili Liu & Ian D. Blum & Annette A. Wang & Elijah J. Blank & Jiali Xiong & Joseph L. Bedont & Anna J. Chang & Habon Issa , 2023. "A clock-dependent brake for rhythmic arousal in the dorsomedial hypothalamus," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Xiaomeng Wan & Jiashun Xiao & Sindy Sing Ting Tam & Mingxuan Cai & Ryohichi Sugimura & Yang Wang & Xiang Wan & Zhixiang Lin & Angela Ruohao Wu & Can Yang, 2023. "Integrating spatial and single-cell transcriptomics data using deep generative models with SpatialScope," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
- Riccardo De Santis & Fred Etoc & Edwin A. Rosado-Olivieri & Ali H. Brivanlou, 2021. "Self-organization of human dorsal-ventral forebrain structures by light induced SHH," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
- Rongbo Shen & Lin Liu & Zihan Wu & Ying Zhang & Zhiyuan Yuan & Junfu Guo & Fan Yang & Chao Zhang & Bichao Chen & Wanwan Feng & Chao Liu & Jing Guo & Guozhen Fan & Yong Zhang & Yuxiang Li & Xun Xu & Ji, 2022. "Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- E. R. Velasco & A. Florido & Á Flores & E. Senabre & A. Gomez-Gomez & A. Torres & A. Roca & S. Norrholm & E. L. Newman & P. Das & R. A. Ross & A. Lori & O. J. Pozo & K. J. Ressler & L. L. Garcia-Estev, 2022. "PACAP-PAC1R modulates fear extinction via the ventromedial hypothalamus," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Václav Havel & Andrew C. Kruegel & Benjamin Bechand & Scot McIntosh & Leia Stallings & Alana Hodges & Madalee G. Wulf & Mel Nelson & Amanda Hunkele & Michael Ansonoff & John E. Pintar & Christopher Hw, 2024. "Oxa-Iboga alkaloids lack cardiac risk and disrupt opioid use in animal models," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
- Maxime Brunner & David Lopez-Rodriguez & Judith Estrada-Meza & Rafik Dali & Antoine Rohrbach & Tamara Deglise & Andrea Messina & Bernard Thorens & Federico Santoni & Fanny Langlet, 2024. "Fasting induces metabolic switches and spatial redistributions of lipid processing and neuronal interactions in tanycytes," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Ioannis Mantas & Ivana Flais & Yuvarani Masarapu & Tudor Ionescu & Solène Frapard & Felix Jung & Pierre Merre & Marcus Saarinen & Katarina Tiklova & Behzad Yaghmaeian Salmani & Linda Gillberg & Xiaoqu, 2024. "Claustrum and dorsal endopiriform cortex complex cell-identity is determined by Nurr1 and regulates hallucinogenic-like states in mice," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Benjamin L. Walker & Qing Nie, 2023. "NeST: nested hierarchical structure identification in spatial transcriptomic data," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Xosé Luís Deán-Ben & Justine Robin & Daniil Nozdriukhin & Ruiqing Ni & Jim Zhao & Chaim Glück & Jeanne Droux & Juan Sendón-Lago & Zhenyue Chen & Quanyu Zhou & Bruno Weber & Susanne Wegener & Anxo Vida, 2023. "Deep optoacoustic localization microangiography of ischemic stroke in mice," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
- David Wolf & Renée Hartig & Yi Zhuo & Max F. Scheller & Mirko Articus & Marcel Moor & Valery Grinevich & Christiane Linster & Eleonora Russo & Wolfgang Weber-Fahr & Jonathan R. Reinwald & Wolfgang Kel, 2024. "Oxytocin induces the formation of distinctive cortical representations and cognitions biased toward familiar mice," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Sandeep Sharma & Cecilia A. Badenhorst & Donovan M. Ashby & Stephanie A. Vito & Michelle A. Tran & Zahra Ghavasieh & Gurleen K. Grewal & Cole R. Belway & Alexander McGirr & Patrick J. Whelan, 2024. "Inhibitory medial zona incerta pathway drives exploratory behavior by inhibiting glutamatergic cuneiform neurons," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Tingting Bo & Jie Li & Ganlu Hu & Ge Zhang & Wei Wang & Qian Lv & Shaoling Zhao & Junjie Ma & Meng Qin & Xiaohui Yao & Meiyun Wang & Guang-Zhong Wang & Zheng Wang, 2023. "Brain-wide and cell-specific transcriptomic insights into MRI-derived cortical morphology in macaque monkeys," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
- Shijia Zhu & Naoto Kubota & Shidan Wang & Tao Wang & Guanghua Xiao & Yujin Hoshida, 2024. "STIE: Single-cell level deconvolution, convolution, and clustering in in situ capturing-based spatial transcriptomics," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
- Takashi Nagashima & Suguru Tohyama & Kaori Mikami & Masashi Nagase & Mieko Morishima & Atsushi Kasai & Hitoshi Hashimoto & Ayako M. Watabe, 2022. "Parabrachial-to-parasubthalamic nucleus pathway mediates fear-induced suppression of feeding in male mice," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Jimena L. Frontera & Romain W. Sala & Ioana A. Georgescu & Hind Baba Aissa & Marion N. d’Almeida & Daniela Popa & Clément Léna, 2023. "The cerebellum regulates fear extinction through thalamo-prefrontal cortex interactions in male mice," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Vincent Bazinet & Justine Y. Hansen & Reinder Vos de Wael & Boris C. Bernhardt & Martijn P. Heuvel & Bratislav Misic, 2023. "Assortative mixing in micro-architecturally annotated brain connectomes," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Benjamin M. Zemel & Alexander A. Nevue & Andre Dagostin & Peter V. Lovell & Claudio V. Mello & Henrique Gersdorff, 2021. "Resurgent Na+ currents promote ultrafast spiking in projection neurons that drive fine motor control," Nature Communications, Nature, vol. 12(1), pages 1-23, December.
- Biao Zhang & Shuqin Zhang & Shihua Zhang, 2024. "Whole brain alignment of spatial transcriptomics between humans and mice with BrainAlign," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
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- Liang Shi & Xiaoxi Fu & Shen Gui & Tong Wan & Junjie Zhuo & Jinling Lu & Pengcheng Li, 2024. "Global spatiotemporal synchronizing structures of spontaneous neural activities in different cell types," Nature Communications, Nature, vol. 15(1), pages 1-17, December.