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Summing up the noise in gene networks

Citations

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Cited by:

  1. Hui Zhang & Yueling Chen & Yong Chen, 2012. "Noise Propagation in Gene Regulation Networks Involving Interlinked Positive and Negative Feedback Loops," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-8, December.
  2. Jin Wang & Bo Huang & Xuefeng Xia & Zhirong Sun, 2006. "Funneled Landscape Leads to Robustness of Cell Networks: Yeast Cell Cycle," PLOS Computational Biology, Public Library of Science, vol. 2(11), pages 1-10, November.
  3. Kyung H Kim & Herbert M Sauro, 2012. "Adjusting Phenotypes by Noise Control," PLOS Computational Biology, Public Library of Science, vol. 8(1), pages 1-14, January.
  4. Jérémie Bourdon & Damien Eveillard & Anne Siegel, 2011. "Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network," PLOS Computational Biology, Public Library of Science, vol. 7(9), pages 1-11, September.
  5. Cappelletti, Daniele & Pal Majumder, Abhishek & Wiuf, Carsten, 2021. "The dynamics of stochastic mono-molecular reaction systems in stochastic environments," Stochastic Processes and their Applications, Elsevier, vol. 137(C), pages 106-148.
  6. Luca Cardelli & Rosa D Hernansaiz-Ballesteros & Neil Dalchau & Attila Csikász-Nagy, 2017. "Efficient Switches in Biology and Computer Science," PLOS Computational Biology, Public Library of Science, vol. 13(1), pages 1-16, January.
  7. Abhyudai Singh & Mohammad Soltani, 2013. "Quantifying Intrinsic and Extrinsic Variability in Stochastic Gene Expression Models," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-12, December.
  8. Chen, Aimin & Tian, Tianhai & Chen, Yiren & Zhou, Tianshou, 2022. "Stochastic analysis of a complex gene-expression model," Chaos, Solitons & Fractals, Elsevier, vol. 160(C).
  9. Arjun Raj & Charles S Peskin & Daniel Tranchina & Diana Y Vargas & Sanjay Tyagi, 2006. "Stochastic mRNA Synthesis in Mammalian Cells," PLOS Biology, Public Library of Science, vol. 4(10), pages 1-13, September.
  10. Mayu Sugiyama & Takashi Saitou & Hiroshi Kurokawa & Asako Sakaue-Sawano & Takeshi Imamura & Atsushi Miyawaki & Tadahiro Iimura, 2014. "Live Imaging-Based Model Selection Reveals Periodic Regulation of the Stochastic G1/S Phase Transition in Vertebrate Axial Development," PLOS Computational Biology, Public Library of Science, vol. 10(12), pages 1-16, December.
  11. Yurie Okabe-Oho & Hiroki Murakami & Suguru Oho & Masaki Sasai, 2009. "Stable, Precise, and Reproducible Patterning of Bicoid and Hunchback Molecules in the Early Drosophila Embryo," PLOS Computational Biology, Public Library of Science, vol. 5(8), pages 1-20, August.
  12. Namiko Mitarai & Ian B Dodd & Michael T Crooks & Kim Sneppen, 2008. "The Generation of Promoter-Mediated Transcriptional Noise in Bacteria," PLOS Computational Biology, Public Library of Science, vol. 4(7), pages 1-9, July.
  13. Elijah Roberts & Andrew Magis & Julio O Ortiz & Wolfgang Baumeister & Zaida Luthey-Schulten, 2011. "Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study," PLOS Computational Biology, Public Library of Science, vol. 7(3), pages 1-21, March.
  14. Wang, Jia-Zeng & Ma, Shu & Ji, Yu & Sun, Qi, 2023. "Response to multiplicative noise: The cross-spectrum of membrane voltage fluctuation and voltage-independent conductance noise," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 622(C).
  15. Yuval Elhanati & Naama Brenner, 2012. "Metabolic Variability in Micro-Populations," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-9, December.
  16. Gil Hornung & Naama Barkai, 2008. "Noise Propagation and Signaling Sensitivity in Biological Networks: A Role for Positive Feedback," PLOS Computational Biology, Public Library of Science, vol. 4(1), pages 1-7, January.
  17. Tina Toni & Bruce Tidor, 2013. "Combined Model of Intrinsic and Extrinsic Variability for Computational Network Design with Application to Synthetic Biology," PLOS Computational Biology, Public Library of Science, vol. 9(3), pages 1-17, March.
  18. Tae J Lee & Guang Yao & Dorothy C Bennett & Joseph R Nevins & Lingchong You, 2010. "Stochastic E2F Activation and Reconciliation of Phenomenological Cell-Cycle Models," PLOS Biology, Public Library of Science, vol. 8(9), pages 1-11, September.
  19. Lee, Julian, 2023. "Poisson distributions in stochastic dynamics of gene expression: What events do they count?," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 630(C).
  20. Jason P Glotzbach & Michael Januszyk & Ivan N Vial & Victor W Wong & Alexander Gelbard & Tomer Kalisky & Hariharan Thangarajah & Michael T Longaker & Stephen R Quake & Gilbert Chu & Geoffrey C Gurtner, 2011. "An Information Theoretic, Microfluidic-Based Single Cell Analysis Permits Identification of Subpopulations among Putatively Homogeneous Stem Cells," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-10, June.
  21. Ruoyu Luo & Lin Ye & Chenyang Tao & Kankan Wang, 2013. "Simulation of E. coli Gene Regulation including Overlapping Cell Cycles, Growth, Division, Time Delays and Noise," PLOS ONE, Public Library of Science, vol. 8(4), pages 1-10, April.
  22. Keun-Young Kim & Jin Wang, 2007. "Potential Energy Landscape and Robustness of a Gene Regulatory Network: Toggle Switch," PLOS Computational Biology, Public Library of Science, vol. 3(3), pages 1-13, March.
  23. Frank J Bruggeman & Nils Blüthgen & Hans V Westerhoff, 2009. "Noise Management by Molecular Networks," PLOS Computational Biology, Public Library of Science, vol. 5(9), pages 1-11, September.
  24. dos Santos, Renato Vieira & da Silva, Linaena Méricy, 2015. "Discreteness induced extinction," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 438(C), pages 17-25.
  25. Tim Lijster & Christoffer Åberg, 2020. "Asymmetry of nanoparticle inheritance upon cell division: Effect on the coefficient of variation," PLOS ONE, Public Library of Science, vol. 15(11), pages 1-18, November.
  26. Benjamin B Kaufmann & Qiong Yang & Jerome T Mettetal & Alexander van Oudenaarden, 2007. "Heritable Stochastic Switching Revealed by Single-Cell Genealogy," PLOS Biology, Public Library of Science, vol. 5(9), pages 1-8, September.
  27. Deena R Schmidt & Roberto F Galán & Peter J Thomas, 2018. "Stochastic shielding and edge importance for Markov chains with timescale separation," PLOS Computational Biology, Public Library of Science, vol. 14(6), pages 1-35, June.
  28. Richard Moore & Hsu Kiang Ooi & Taek Kang & Leonidas Bleris & Lan Ma, 2015. "MiR-192-Mediated Positive Feedback Loop Controls the Robustness of Stress-Induced p53 Oscillations in Breast Cancer Cells," PLOS Computational Biology, Public Library of Science, vol. 11(12), pages 1-17, December.
  29. Liming Wang & Jack Xin & Qing Nie, 2010. "A Critical Quantity for Noise Attenuation in Feedback Systems," PLOS Computational Biology, Public Library of Science, vol. 6(4), pages 1-17, April.
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