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Global analysis of protein expression in yeast

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Cited by:

  1. Jae Kyoung Kim & Eduardo D Sontag, 2017. "Reduction of multiscale stochastic biochemical reaction networks using exact moment derivation," PLOS Computational Biology, Public Library of Science, vol. 13(6), pages 1-24, June.
  2. Jason W Locasale & Arup K Chakraborty, 2008. "Regulation of Signal Duration and the Statistical Dynamics of Kinase Activation by Scaffold Proteins," PLOS Computational Biology, Public Library of Science, vol. 4(6), pages 1-12, June.
  3. Kazunari Iwamoto & Yuki Shindo & Koichi Takahashi, 2016. "Modeling Cellular Noise Underlying Heterogeneous Cell Responses in the Epidermal Growth Factor Signaling Pathway," PLOS Computational Biology, Public Library of Science, vol. 12(11), pages 1-18, November.
  4. Brian J. Caldwell & Andrew S. Norris & Caroline F. Karbowski & Alyssa M. Wiegand & Vicki H. Wysocki & Charles E. Bell, 2022. "Structure of a RecT/Redβ family recombinase in complex with a duplex intermediate of DNA annealing," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
  5. Matteo Barberis & Edda Klipp & Marco Vanoni & Lilia Alberghina, 2007. "Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network," PLOS Computational Biology, Public Library of Science, vol. 3(4), pages 1-18, April.
  6. Nebojsa Jukic & Alma P. Perrino & Frédéric Humbert & Aurélien Roux & Simon Scheuring, 2022. "Snf7 spirals sense and alter membrane curvature," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
  7. Michelle D Leach & Katarzyna M Tyc & Alistair J P Brown & Edda Klipp, 2012. "Modelling the Regulation of Thermal Adaptation in Candida albicans, a Major Fungal Pathogen of Humans," PLOS ONE, Public Library of Science, vol. 7(3), pages 1-14, March.
  8. Michael D Barton & Daniela Delneri & Stephen G Oliver & Magnus Rattray & Casey M Bergman, 2010. "Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast," PLOS ONE, Public Library of Science, vol. 5(8), pages 1-13, August.
  9. Keisuke Obara & Taku Yoshikawa & Ryu Yamaguchi & Keiko Kuwata & Kunio Nakatsukasa & Kohei Nishimura & Takumi Kamura, 2022. "Proteolysis of adaptor protein Mmr1 during budding is necessary for mitochondrial homeostasis in Saccharomyces cerevisiae," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
  10. Ryan Suderman & Eric J Deeds, 2013. "Machines vs. Ensembles: Effective MAPK Signaling through Heterogeneous Sets of Protein Complexes," PLOS Computational Biology, Public Library of Science, vol. 9(10), pages 1-11, October.
  11. Maximilian Seidel & Natalie Romanov & Agnieszka Obarska-Kosinska & Anja Becker & Nayara Trevisan Doimo de Azevedo & Jan Provaznik & Sankarshana R. Nagaraja & Jonathan J. M. Landry & Vladimir Benes & M, 2023. "Co-translational binding of importins to nascent proteins," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  12. Zhdanov, Vladimir P., 2011. "Periodic perturbation of the bistable kinetics of gene expression," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 390(1), pages 57-64.
  13. Paola Fabrizio & Shawn Hoon & Mehrnaz Shamalnasab & Abdulaye Galbani & Min Wei & Guri Giaever & Corey Nislow & Valter D Longo, 2010. "Genome-Wide Screen in Saccharomyces cerevisiae Identifies Vacuolar Protein Sorting, Autophagy, Biosynthetic, and tRNA Methylation Genes Involved in Life Span Regulation," PLOS Genetics, Public Library of Science, vol. 6(7), pages 1-14, July.
  14. Joke J F A van Vugt & Martijn de Jager & Magdalena Murawska & Alexander Brehm & John van Noort & Colin Logie, 2009. "Multiple Aspects of ATP-Dependent Nucleosome Translocation by RSC and Mi-2 Are Directed by the Underlying DNA Sequence," PLOS ONE, Public Library of Science, vol. 4(7), pages 1-14, July.
  15. Shinsuke Ohnuki & Yoshikazu Ohya, 2018. "High-dimensional single-cell phenotyping reveals extensive haploinsufficiency," PLOS Biology, Public Library of Science, vol. 16(5), pages 1-23, May.
  16. Ying Xiong & Weijing Han & Chunhua Xu & Jing Shi & Lisha Wang & Taoli Jin & Qi Jia & Ying Lu & Shuxin Hu & Shuo-Xing Dou & Wei Lin & Terence R. Strick & Shuang Wang & Ming Li, 2024. "Single-molecule reconstruction of eukaryotic factor-dependent transcription termination," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
  17. Xinkai Wu & Mengze Xu & Jian-Rong Yang & Jian Lu, 2024. "Genome-wide impact of codon usage bias on translation optimization in Drosophila melanogaster," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  18. Rok Grah & Tamar Friedlander, 2020. "The relation between crosstalk and gene regulation form revisited," PLOS Computational Biology, Public Library of Science, vol. 16(2), pages 1-24, February.
  19. Yang-Nim Park & David Morales & Emily H Rubinson & Daniel Masison & Evan Eisenberg & Lois E Greene, 2012. "Differences in the Curing of [PSI+] Prion by Various Methods of Hsp104 Inactivation," PLOS ONE, Public Library of Science, vol. 7(6), pages 1-15, June.
  20. Morgane Boone & Pathmanaban Ramasamy & Jasper Zuallaert & Robbin Bouwmeester & Berre Moer & Davy Maddelein & Demet Turan & Niels Hulstaert & Hannah Eeckhaut & Elien Vandermarliere & Lennart Martens & , 2021. "Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit," Nature Communications, Nature, vol. 12(1), pages 1-16, December.
  21. Teeraphan Laomettachit & Katherine C Chen & William T Baumann & John J Tyson, 2016. "A Model of Yeast Cell-Cycle Regulation Based on a Standard Component Modeling Strategy for Protein Regulatory Networks," PLOS ONE, Public Library of Science, vol. 11(5), pages 1-43, May.
  22. Anneke Brümmer & Carlos Salazar & Vittoria Zinzalla & Lilia Alberghina & Thomas Höfer, 2010. "Mathematical Modelling of DNA Replication Reveals a Trade-off between Coherence of Origin Activation and Robustness against Rereplication," PLOS Computational Biology, Public Library of Science, vol. 6(5), pages 1-13, May.
  23. Hyunju Cho & Yumeng Liu & SangYoon Chung & Sowmya Chandrasekar & Shimon Weiss & Shu-ou Shan, 2024. "Dynamic stability of Sgt2 enables selective and privileged client handover in a chaperone triad," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  24. Marc S Sherman & Barak A Cohen, 2014. "A Computational Framework for Analyzing Stochasticity in Gene Expression," PLOS Computational Biology, Public Library of Science, vol. 10(5), pages 1-13, May.
  25. Maja Bialecka-Fornal & Heun Jin Lee & Hannah A DeBerg & Chris S Gandhi & Rob Phillips, 2012. "Single-Cell Census of Mechanosensitive Channels in Living Bacteria," PLOS ONE, Public Library of Science, vol. 7(3), pages 1-13, March.
  26. Alexander M. Franks & Gábor Csárdi & D. Allan Drummond & Edoardo M. Airoldi, 2015. "Estimating a Structured Covariance Matrix From Multilab Measurements in High-Throughput Biology," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(509), pages 27-44, March.
  27. Alexey A Gritsenko & Marc Hulsman & Marcel J T Reinders & Dick de Ridder, 2015. "Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data," PLOS Computational Biology, Public Library of Science, vol. 11(8), pages 1-26, August.
  28. Emma Pierson & the GTEx Consortium & Daphne Koller & Alexis Battle & Sara Mostafavi, 2015. "Sharing and Specificity of Co-expression Networks across 35 Human Tissues," PLOS Computational Biology, Public Library of Science, vol. 11(5), pages 1-19, May.
  29. Ulises H. Guzman & Henriette Aksnes & Rasmus Ree & Nicolai Krogh & Magnus E. Jakobsson & Lars J. Jensen & Thomas Arnesen & Jesper V. Olsen, 2023. "Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover in Saccharomyces cerevisiae," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
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