The relation between crosstalk and gene regulation form revisited
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DOI: 10.1371/journal.pcbi.1007642
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References listed on IDEAS
- Avihu H. Yona & Eric J. Alm & Jeff Gore, 2018. "Random sequences rapidly evolve into de novo promoters," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
- Erez Dekel & Uri Alon, 2005. "Optimality and evolutionary tuning of the expression level of a protein," Nature, Nature, vol. 436(7050), pages 588-592, July.
- Michael A. Rowland & Joseph M. Greenbaum & Eric J. Deeds, 2017. "Crosstalk and the evolvability of intracellular communication," Nature Communications, Nature, vol. 8(1), pages 1-8, December.
- Sina Ghaemmaghami & Won-Ki Huh & Kiowa Bower & Russell W. Howson & Archana Belle & Noah Dephoure & Erin K. O'Shea & Jonathan S. Weissman, 2003. "Global analysis of protein expression in yeast," Nature, Nature, vol. 425(6959), pages 737-741, October.
- Tamar Friedlander & Roshan Prizak & Călin C. Guet & Nicholas H. Barton & Gašper Tkačik, 2016. "Intrinsic limits to gene regulation by global crosstalk," Nature Communications, Nature, vol. 7(1), pages 1-12, November.
- Tamar Friedlander & Roshan Prizak & Nicholas H. Barton & Gašper Tkačik, 2017. "Evolution of new regulatory functions on biophysically realistic fitness landscapes," Nature Communications, Nature, vol. 8(1), pages 1-11, December.
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- Keren Erez & Amit Jangid & Ohad Noy Feldheim & Tamar Friedlander, 2024. "The role of promiscuous molecular recognition in the evolution of RNase-based self-incompatibility in plants," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
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