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Global analysis of protein localization in budding yeast
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Cited by:
- Oliver M Crook & Aikaterini Geladaki & Daniel J H Nightingale & Owen L Vennard & Kathryn S Lilley & Laurent Gatto & Paul D W Kirk, 2020. "A semi-supervised Bayesian approach for simultaneous protein sub-cellular localisation assignment and novelty detection," PLOS Computational Biology, Public Library of Science, vol. 16(11), pages 1-21, November.
- Stefan A. Hoffmann & Yizhi Cai, 2024. "Engineering stringent genetic biocontainment of yeast with a protein stability switch," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Kiyan Shabestary & Cinzia Klemm & Benedict Carling & James Marshall & Juline Savigny & Marko Storch & Rodrigo Ledesma-Amaro, 2024. "Phenotypic heterogeneity follows a growth-viability tradeoff in response to amino acid identity," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
- Maya Dinur-Mills & Merav Tal & Ophry Pines, 2008. "Dual Targeted Mitochondrial Proteins Are Characterized by Lower MTS Parameters and Total Net Charge," PLOS ONE, Public Library of Science, vol. 3(5), pages 1-8, May.
- Verena Kohler & Andreas Kohler & Lisa Larsson Berglund & Xinxin Hao & Sarah Gersing & Axel Imhof & Thomas Nyström & Johanna L. Höög & Martin Ott & Claes Andréasson & Sabrina Büttner, 2024. "Nuclear Hsp104 safeguards the dormant translation machinery during quiescence," Nature Communications, Nature, vol. 15(1), pages 1-20, December.
- Julia P. Schessner & Vincent Albrecht & Alexandra K. Davies & Pavel Sinitcyn & Georg H. H. Borner, 2023. "Deep and fast label-free Dynamic Organellar Mapping," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
- Rowan S M Howell & Cinzia Klemm & Peter H Thorpe & Attila Csikász-Nagy, 2020. "Unifying the mechanism of mitotic exit control in a spatiotemporal logical model," PLOS Biology, Public Library of Science, vol. 18(11), pages 1-35, November.
- Nebojsa Jukic & Alma P. Perrino & Frédéric Humbert & Aurélien Roux & Simon Scheuring, 2022. "Snf7 spirals sense and alter membrane curvature," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Michelle Lindström & Lihua Chen & Shan Jiang & Dan Zhang & Yuan Gao & Ju Zheng & Xinxin Hao & Xiaoxue Yang & Arpitha Kabbinale & Johannes Thoma & Lisa C. Metzger & Deyuan Y. Zhang & Xuefeng Zhu & Huis, 2022. "Lsm7 phase-separated condensates trigger stress granule formation," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
- Jian Cui & Jinghua Liu & Yuhua Li & Tieliu Shi, 2011. "Integrative Identification of Arabidopsis Mitochondrial Proteome and Its Function Exploitation through Protein Interaction Network," PLOS ONE, Public Library of Science, vol. 6(1), pages 1-16, January.
- Alex N Nguyen Ba & Bob Strome & Jun Jie Hua & Jonathan Desmond & Isabelle Gagnon-Arsenault & Eric L Weiss & Christian R Landry & Alan M Moses, 2014. "Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences," PLOS Computational Biology, Public Library of Science, vol. 10(12), pages 1-15, December.
- Arthur Fischbach & Angela Johns & Kara L. Schneider & Xinxin Hao & Peter Tessarz & Thomas Nyström, 2023. "Artificial Hsp104-mediated systems for re-localizing protein aggregates," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
- Lit-Hsin Loo & Danai Laksameethanasan & Yi-Ling Tung, 2014. "Quantitative Protein Localization Signatures Reveal an Association between Spatial and Functional Divergences of Proteins," PLOS Computational Biology, Public Library of Science, vol. 10(3), pages 1-17, March.
- Jian Qiu & William Stafford Noble, 2008. "Predicting Co-Complexed Protein Pairs from Heterogeneous Data," PLOS Computational Biology, Public Library of Science, vol. 4(4), pages 1-10, April.
- Sunny Sharma & Jun Yang & Ewa Grudzien-Nogalska & Jessica Shivas & Kelvin Y. Kwan & Megerditch Kiledjian, 2022. "Xrn1 is a deNADding enzyme modulating mitochondrial NAD-capped RNA," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
- Joke J F A van Vugt & Martijn de Jager & Magdalena Murawska & Alexander Brehm & John van Noort & Colin Logie, 2009. "Multiple Aspects of ATP-Dependent Nucleosome Translocation by RSC and Mi-2 Are Directed by the Underlying DNA Sequence," PLOS ONE, Public Library of Science, vol. 4(7), pages 1-14, July.
- Xiaomei Wu & Erli Pang & Kui Lin & Zhen-Ming Pei, 2013. "Improving the Measurement of Semantic Similarity between Gene Ontology Terms and Gene Products: Insights from an Edge- and IC-Based Hybrid Method," PLOS ONE, Public Library of Science, vol. 8(5), pages 1-11, May.
- Yosuke Ito & Yuhei Chadani & Tatsuya Niwa & Ayako Yamakawa & Kodai Machida & Hiroaki Imataka & Hideki Taguchi, 2022. "Nascent peptide-induced translation discontinuation in eukaryotes impacts biased amino acid usage in proteomes," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
- William Lee & Robert P St.Onge & Michael Proctor & Patrick Flaherty & Michael I Jordan & Adam P Arkin & Ronald W Davis & Corey Nislow & Guri Giaever, 2005. "Genome-Wide Requirements for Resistance to Functionally Distinct DNA-Damaging Agents," PLOS Genetics, Public Library of Science, vol. 1(2), pages 1-1, August.
- Louis-François Handfield & Yolanda T Chong & Jibril Simmons & Brenda J Andrews & Alan M Moses, 2013. "Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins," PLOS Computational Biology, Public Library of Science, vol. 9(6), pages 1-19, June.
- Koji Ishikawa & Akari Ishihara & Hisao Moriya, 2020. "Exploring the Complexity of Protein-Level Dosage Compensation that Fine-Tunes Stoichiometry of Multiprotein Complexes," PLOS Genetics, Public Library of Science, vol. 16(10), pages 1-20, October.
- Nicola M. Moloney & Konstantin Barylyuk & Eelco Tromer & Oliver M. Crook & Lisa M. Breckels & Kathryn S. Lilley & Ross F. Waller & Paula MacGregor, 2023. "Mapping diversity in African trypanosomes using high resolution spatial proteomics," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Carine Dominique & Nana Kadidia Maiga & Alfonso Méndez-Godoy & Benjamin Pillet & Hussein Hamze & Isabelle Léger-Silvestre & Yves Henry & Virginie Marchand & Valdir Gomes Neto & Christophe Dez & Yuri M, 2024. "The dual life of disordered lysine-rich domains of snoRNPs in rRNA modification and nucleolar compaction," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Md. Abdulla Al Mamun & Wei Cao & Shugo Nakamura & Jun-ichi Maruyama, 2023. "Large-scale identification of genes involved in septal pore plugging in multicellular fungi," Nature Communications, Nature, vol. 14(1), pages 1-17, December.
- Rory M Donovan & Jose-Juan Tapia & Devin P Sullivan & James R Faeder & Robert F Murphy & Markus Dittrich & Daniel M Zuckerman, 2016. "Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories," PLOS Computational Biology, Public Library of Science, vol. 12(2), pages 1-25, February.
- Hugh D. Goold & Heinrich Kroukamp & Paige E. Erpf & Yu Zhao & Philip Kelso & Julie Calame & John J. B. Timmins & Elizabeth L. I. Wightman & Kai Peng & Alexander C. Carpenter & Briardo Llorente & Carme, 2025. "Construction and iterative redesign of synXVI a 903 kb synthetic Saccharomyces cerevisiae chromosome," Nature Communications, Nature, vol. 16(1), pages 1-14, December.
- Chung-Chi Liao & Yi-Sen Wang & Wen-Chieh Pi & Chun-Hsiung Wang & Yi-Min Wu & Wei-Yi Chen & Kuo-Chiang Hsia, 2023. "Structural convergence endows nuclear transport receptor Kap114p with a transcriptional repressor function toward TATA-binding protein," Nature Communications, Nature, vol. 14(1), pages 1-16, December.