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Noise in eukaryotic gene expression

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  1. Li, Hongying & Yao, Chengli, 2017. "The influence of internal noise on the detection of hormonal signal with the existence of external noise in a cell system," Applied Mathematics and Computation, Elsevier, vol. 314(C), pages 1-6.
  2. Chih-Yuan Hsu & Bor-Sen Chen, 2016. "Systematic Design of a Metal Ion Biosensor: A Multi-Objective Optimization Approach," PLOS ONE, Public Library of Science, vol. 11(11), pages 1-16, November.
  3. Hui Zhang & Yueling Chen & Yong Chen, 2012. "Noise Propagation in Gene Regulation Networks Involving Interlinked Positive and Negative Feedback Loops," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-8, December.
  4. Liu, Pei & Ning, Li Juan, 2016. "Transitions induced by cross-correlated bounded noises and time delay in a genotype selection model," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 441(C), pages 32-39.
  5. Mohammad Soltani & Cesar A Vargas-Garcia & Duarte Antunes & Abhyudai Singh, 2016. "Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes," PLOS Computational Biology, Public Library of Science, vol. 12(8), pages 1-23, August.
  6. Blasi, Monica Francesca & Casorelli, Ida & Colosimo, Alfredo & Blasi, Francesco Simone & Bignami, Margherita & Giuliani, Alessandro, 2005. "A recursive network approach can identify constitutive regulatory circuits in gene expression data," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 348(C), pages 349-370.
  7. Stefano Ciliberti & Olivier C Martin & Andreas Wagner, 2007. "Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology," PLOS Computational Biology, Public Library of Science, vol. 3(2), pages 1-10, February.
  8. Abhyudai Singh & Mohammad Soltani, 2013. "Quantifying Intrinsic and Extrinsic Variability in Stochastic Gene Expression Models," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-12, December.
  9. Tobias May & Lee Eccleston & Sabrina Herrmann & Hansjörg Hauser & Jorge Goncalves & Dagmar Wirth, 2008. "Bimodal and Hysteretic Expression in Mammalian Cells from a Synthetic Gene Circuit," PLOS ONE, Public Library of Science, vol. 3(6), pages 1-7, June.
  10. Thounaojam, Umeshkanta Singh, 2022. "Stochastic chaos in chemical Lorenz system: Interplay of intrinsic noise and nonlinearity," Chaos, Solitons & Fractals, Elsevier, vol. 165(P1).
  11. Seyed Yahya Anvar & Allan Tucker & Veronica Vinciotti & Andrea Venema & Gert-Jan B van Ommen & Silvere M van der Maarel & Vered Raz & Peter A C ‘t Hoen, 2011. "Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy," PLOS Computational Biology, Public Library of Science, vol. 7(11), pages 1-14, November.
  12. Xu, Yong & Zhu, Ya-nan & Shen, Jianwei & Su, Jianbin, 2014. "Switch dynamics for stochastic model of genetic toggle switch," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 416(C), pages 461-466.
  13. Chen, Aimin & Tian, Tianhai & Chen, Yiren & Zhou, Tianshou, 2022. "Stochastic analysis of a complex gene-expression model," Chaos, Solitons & Fractals, Elsevier, vol. 160(C).
  14. Michael W Klymkowsky & Kathy Garvin-Doxas, 2008. "Recognizing Student Misconceptions through Ed's Tools and the Biology Concept Inventory," PLOS Biology, Public Library of Science, vol. 6(1), pages 1-4, January.
  15. Chichigina, Olga A. & Valenti, Davide, 2021. "Strongly super-Poisson statistics replaced by a wide-pulse Poisson process: The billiard random generator," Chaos, Solitons & Fractals, Elsevier, vol. 153(P1).
  16. Karl P. Gerhardt & Satyajit D. Rao & Evan J. Olson & Oleg A. Igoshin & Jeffrey J. Tabor, 2021. "Independent control of mean and noise by convolution of gene expression distributions," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
  17. Chunjuan Zhu & Zibo Chen & Qiwen Sun, 2022. "Stochastic Transcription with Alterable Synthesis Rates," Mathematics, MDPI, vol. 10(13), pages 1-20, June.
  18. Diana Monteoliva & Christina B McCarthy & Luis Diambra, 2013. "Noise Minimisation in Gene Expression Switches," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-9, December.
  19. Arjun Raj & Charles S Peskin & Daniel Tranchina & Diana Y Vargas & Sanjay Tyagi, 2006. "Stochastic mRNA Synthesis in Mammalian Cells," PLOS Biology, Public Library of Science, vol. 4(10), pages 1-13, September.
  20. G.-W. Weber & P. Taylan & S. Alparslan-Gök & S. Özöğür-Akyüz & B. Akteke-Öztürk, 2008. "Optimization of gene-environment networks in the presence of errors and uncertainty with Chebychev approximation," TOP: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 16(2), pages 284-318, December.
  21. David M Holloway & Alexander V Spirov, 2017. "Transcriptional bursting in Drosophila development: Stochastic dynamics of eve stripe 2 expression," PLOS ONE, Public Library of Science, vol. 12(4), pages 1-24, April.
  22. Arantxa Urchueguía & Luca Galbusera & Dany Chauvin & Gwendoline Bellement & Thomas Julou & Erik van Nimwegen, 2021. "Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network," PLOS Biology, Public Library of Science, vol. 19(12), pages 1-22, December.
  23. Adam F Prasanphanich & Douglas E White & Margaret A Gran & Melissa L Kemp, 2016. "Kinetic Modeling of ABCG2 Transporter Heterogeneity: A Quantitative, Single-Cell Analysis of the Side Population Assay," PLOS Computational Biology, Public Library of Science, vol. 12(11), pages 1-35, November.
  24. Marc S Sherman & Barak A Cohen, 2014. "A Computational Framework for Analyzing Stochasticity in Gene Expression," PLOS Computational Biology, Public Library of Science, vol. 10(5), pages 1-13, May.
  25. Burton W Andrews & Pablo A Iglesias, 2007. "An Information-Theoretic Characterization of the Optimal Gradient Sensing Response of Cells," PLOS Computational Biology, Public Library of Science, vol. 3(8), pages 1-9, August.
  26. Namiko Mitarai & Ian B Dodd & Michael T Crooks & Kim Sneppen, 2008. "The Generation of Promoter-Mediated Transcriptional Noise in Bacteria," PLOS Computational Biology, Public Library of Science, vol. 4(7), pages 1-9, July.
  27. Elijah Roberts & Andrew Magis & Julio O Ortiz & Wolfgang Baumeister & Zaida Luthey-Schulten, 2011. "Noise Contributions in an Inducible Genetic Switch: A Whole-Cell Simulation Study," PLOS Computational Biology, Public Library of Science, vol. 7(3), pages 1-21, March.
  28. Valenti, D. & Tranchina, L. & Brai, M. & Caruso, A. & Cosentino, C. & Spagnolo, B., 2008. "Environmental metal pollution considered as noise: Effects on the spatial distribution of benthic foraminifera in two coastal marine areas of Sicily (Southern Italy)," Ecological Modelling, Elsevier, vol. 213(3), pages 449-462.
  29. Benjamin B Kaufmann & Qiong Yang & Jerome T Mettetal & Alexander van Oudenaarden, 2007. "Heritable Stochastic Switching Revealed by Single-Cell Genealogy," PLOS Biology, Public Library of Science, vol. 5(9), pages 1-8, September.
  30. Dola Sengupta & Sandip Kar, 2015. "Are Quasi-Steady-State Approximated Models Suitable for Quantifying Intrinsic Noise Accurately?," PLOS ONE, Public Library of Science, vol. 10(9), pages 1-24, September.
  31. Johnston Iain G., 2014. "Efficient parametric inference for stochastic biological systems with measured variability," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(3), pages 379-390, June.
  32. Krishnan, Arun & Tomita, Masaru & Giuliani, Alessandro, 2008. "Evolution of gene regulatory networks: Robustness as an emergent property of evolution," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 387(8), pages 2170-2186.
  33. Saurabh Modi & Supravat Dey & Abhyudai Singh, 2021. "Noise suppression in stochastic genetic circuits using PID controllers," PLOS Computational Biology, Public Library of Science, vol. 17(7), pages 1-25, July.
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