Independent control of mean and noise by convolution of gene expression distributions
Author
Abstract
Suggested Citation
DOI: 10.1038/s41467-021-27070-5
Download full text from publisher
References listed on IDEAS
- William J. Blake & Mads KÆrn & Charles R. Cantor & J. J. Collins, 2003. "Noise in eukaryotic gene expression," Nature, Nature, vol. 422(6932), pages 633-637, April.
- Long Cai & Nir Friedman & X. Sunney Xie, 2006. "Stochastic protein expression in individual cells at the single molecule level," Nature, Nature, vol. 440(7082), pages 358-362, March.
- Martin Ackermann & Bärbel Stecher & Nikki E. Freed & Pascal Songhet & Wolf-Dietrich Hardt & Michael Doebeli, 2008. "Self-destructive cooperation mediated by phenotypic noise," Nature, Nature, vol. 454(7207), pages 987-990, August.
- Dirk Benzinger & Mustafa Khammash, 2018. "Pulsatile inputs achieve tunable attenuation of gene expression variability and graded multi-gene regulation," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
- Michelle Hung & Emily Chang & Razika Hussein & Katya Frazier & Jung-Eun Shin & Shiori Sagawa & Han N. Lim, 2014. "Modulating the frequency and bias of stochastic switching to control phenotypic variation," Nature Communications, Nature, vol. 5(1), pages 1-11, December.
- Attila Becskei & Luis Serrano, 2000. "Engineering stability in gene networks by autoregulation," Nature, Nature, vol. 405(6786), pages 590-593, June.
- Alain R. Bonny & João Pedro Fonseca & Jesslyn E. Park & Hana El-Samad, 2021. "Orthogonal control of mean and variability of endogenous genes in a human cell line," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Mohammad Soltani & Cesar A Vargas-Garcia & Duarte Antunes & Abhyudai Singh, 2016. "Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes," PLOS Computational Biology, Public Library of Science, vol. 12(8), pages 1-23, August.
- Chen Jia & Ramon Grima, 2024. "Holimap: an accurate and efficient method for solving stochastic gene network dynamics," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Tobias May & Lee Eccleston & Sabrina Herrmann & Hansjörg Hauser & Jorge Goncalves & Dagmar Wirth, 2008. "Bimodal and Hysteretic Expression in Mammalian Cells from a Synthetic Gene Circuit," PLOS ONE, Public Library of Science, vol. 3(6), pages 1-7, June.
- Abhyudai Singh & Mohammad Soltani, 2013. "Quantifying Intrinsic and Extrinsic Variability in Stochastic Gene Expression Models," PLOS ONE, Public Library of Science, vol. 8(12), pages 1-12, December.
- Stefano Ciliberti & Olivier C Martin & Andreas Wagner, 2007. "Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology," PLOS Computational Biology, Public Library of Science, vol. 3(2), pages 1-10, February.
- Hui Zhang & Yueling Chen & Yong Chen, 2012. "Noise Propagation in Gene Regulation Networks Involving Interlinked Positive and Negative Feedback Loops," PLOS ONE, Public Library of Science, vol. 7(12), pages 1-8, December.
- Benjamin B Kaufmann & Qiong Yang & Jerome T Mettetal & Alexander van Oudenaarden, 2007. "Heritable Stochastic Switching Revealed by Single-Cell Genealogy," PLOS Biology, Public Library of Science, vol. 5(9), pages 1-8, September.
- Li, Hongying & Yao, Chengli, 2017. "The influence of internal noise on the detection of hormonal signal with the existence of external noise in a cell system," Applied Mathematics and Computation, Elsevier, vol. 314(C), pages 1-6.
- Avraham E Mayo & Yaakov Setty & Seagull Shavit & Alon Zaslaver & Uri Alon, 2006. "Plasticity of the cis-Regulatory Input Function of a Gene," PLOS Biology, Public Library of Science, vol. 4(4), pages 1-1, March.
- Ankit Gupta & Mustafa Khammash, 2022. "Frequency spectra and the color of cellular noise," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
- Cencetti, Giulia & Battiston, Federico & Carletti, Timoteo & Fanelli, Duccio, 2020. "Generalized patterns from local and non local reactions," Chaos, Solitons & Fractals, Elsevier, vol. 134(C).
- Lee, Julian, 2023. "Poisson distributions in stochastic dynamics of gene expression: What events do they count?," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 630(C).
- Chih-Yuan Hsu & Bor-Sen Chen, 2016. "Systematic Design of a Metal Ion Biosensor: A Multi-Objective Optimization Approach," PLOS ONE, Public Library of Science, vol. 11(11), pages 1-16, November.
- Gita Naseri, 2023. "A roadmap to establish a comprehensive platform for sustainable manufacturing of natural products in yeast," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Manalee Vishnu Surve & Smita Bhutda & Akshay Datey & Anjali Anil & Shalini Rawat & Athira Pushpakaran & Dipty Singh & Kwang Sik Kim & Dipshikha Chakravortty & Anirban Banerjee, 2018. "Heterogeneity in pneumolysin expression governs the fate of Streptococcus pneumoniae during blood-brain barrier trafficking," PLOS Pathogens, Public Library of Science, vol. 14(7), pages 1-29, July.
- Maxime Batsch & Isaline Guex & Helena Todorov & Clara M. Heiman & Jordan Vacheron & Julia A. Vorholt & Christoph Keel & Jan Roelof van der Meer, 2024. "Fragmented micro-growth habitats present opportunities for alternative competitive outcomes," Nature Communications, Nature, vol. 15(1), pages 1-19, December.
- Kyung H Kim & Herbert M Sauro, 2012. "Adjusting Phenotypes by Noise Control," PLOS Computational Biology, Public Library of Science, vol. 8(1), pages 1-14, January.
- François Bertaux & Sebastián Sosa-Carrillo & Viktoriia Gross & Achille Fraisse & Chetan Aditya & Mariela Furstenheim & Gregory Batt, 2022. "Enhancing bioreactor arrays for automated measurements and reactive control with ReacSight," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
- Blasi, Monica Francesca & Casorelli, Ida & Colosimo, Alfredo & Blasi, Francesco Simone & Bignami, Margherita & Giuliani, Alessandro, 2005. "A recursive network approach can identify constitutive regulatory circuits in gene expression data," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 348(C), pages 349-370.
- Jérémie Bourdon & Damien Eveillard & Anne Siegel, 2011. "Integrating Quantitative Knowledge into a Qualitative Gene Regulatory Network," PLOS Computational Biology, Public Library of Science, vol. 7(9), pages 1-11, September.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27070-5. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.