Transcriptional bursting in Drosophila development: Stochastic dynamics of eve stripe 2 expression
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DOI: 10.1371/journal.pone.0176228
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References listed on IDEAS
- William J. Blake & Mads KÆrn & Charles R. Cantor & J. J. Collins, 2003. "Noise in eukaryotic gene expression," Nature, Nature, vol. 422(6932), pages 633-637, April.
- David M Holloway & Francisco J P Lopes & Luciano da Fontoura Costa & Bruno A N Travençolo & Nina Golyandina & Konstantin Usevich & Alexander V Spirov, 2011. "Gene Expression Noise in Spatial Patterning: hunchback Promoter Structure Affects Noise Amplitude and Distribution in Drosophila Segmentation," PLOS Computational Biology, Public Library of Science, vol. 7(2), pages 1-18, February.
- Johannes Jaeger & Svetlana Surkova & Maxim Blagov & Hilde Janssens & David Kosman & Konstantin N. Kozlov & Manu & Ekaterina Myasnikova & Carlos E. Vanario-Alonso & Maria Samsonova & David H. Sharp & J, 2004. "Dynamic control of positional information in the early Drosophila embryo," Nature, Nature, vol. 430(6997), pages 368-371, July.
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- Chen, Xiaoli & Wu, Fengyan & Duan, Jinqiao & Kurths, Jürgen & Li, Xiaofan, 2019. "Most probable dynamics of a genetic regulatory network under stable Lévy noise," Applied Mathematics and Computation, Elsevier, vol. 348(C), pages 425-436.
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