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A Bayesian approach for generalized linear models with explanatory biomarker measurement variables subject to detection limit: an application to acute lung injury

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  • Huiyun Wu
  • Qingxia Chen
  • Lorraine B. Ware
  • Tatsuki Koyama

Abstract

Biomarkers have the potential to improve our understanding of disease diagnosis and prognosis. Biomarker levels that fall below the assay detection limits (DLs), however, compromise the application of biomarkers in research and practice. Most existing methods to handle non-detects focus on a scenario in which the response variable is subject to the DL; only a few methods consider explanatory variables when dealing with DLs. We propose a Bayesian approach for generalized linear models with explanatory variables subject to lower, upper, or interval DLs. In simulation studies, we compared the proposed Bayesian approach to four commonly used methods in a logistic regression model with explanatory variable measurements subject to the DL. We also applied the Bayesian approach and other four methods in a real study, in which a panel of cytokine biomarkers was studied for their association with acute lung injury (ALI). We found that IL8 was associated with a moderate increase in risk for ALI in the model based on the proposed Bayesian approach.

Suggested Citation

  • Huiyun Wu & Qingxia Chen & Lorraine B. Ware & Tatsuki Koyama, 2012. "A Bayesian approach for generalized linear models with explanatory biomarker measurement variables subject to detection limit: an application to acute lung injury," Journal of Applied Statistics, Taylor & Francis Journals, vol. 39(8), pages 1733-1747, March.
  • Handle: RePEc:taf:japsta:v:39:y:2012:i:8:p:1733-1747
    DOI: 10.1080/02664763.2012.681362
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    1. Philip K. Hopke & Chuanhai Liu & Donald B. Rubin, 2001. "Multiple Imputation for Multivariate Data with Missing and Below‐Threshold Measurements: Time‐Series Concentrations of Pollutants in the Arctic," Biometrics, The International Biometric Society, vol. 57(1), pages 22-33, March.
    2. Robert H. Lyles & Jovonne K. Williams & Rutt Chuachoowong, 2001. "Correlating Two Viral Load Assays with Known Detection Limits," Biometrics, The International Biometric Society, vol. 57(4), pages 1238-1244, December.
    3. Amemiya, Takeshi, 1973. "Regression Analysis when the Dependent Variable is Truncated Normal," Econometrica, Econometric Society, vol. 41(6), pages 997-1016, November.
    4. James P. Hughes, 1999. "Mixed Effects Models with Censored Data with Application to HIV RNA Levels," Biometrics, The International Biometric Society, vol. 55(2), pages 625-629, June.
    5. Haitao Chu & Lawrence H. Moulton & Wendy J. Mack & Douglas J. Passaro & Paulo F. Barroso & Alvaro Muñoz, 2005. "Correlating two continuous variables subject to detection limits in the context of mixture distributions," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 54(5), pages 831-845, November.
    6. J. G. Ibrahim & S. R. Lipsitz & M.‐H. Chen, 1999. "Missing covariates in generalized linear models when the missing data mechanism is non‐ignorable," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(1), pages 173-190.
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