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Hyper Nonlocal Priors for Variable Selection in Generalized Linear Models

Author

Listed:
  • Ho-Hsiang Wu

    (National Cancer Institute)

  • Marco A. R. Ferreira

    (Virginia Tech)

  • Mohamed Elkhouly

    (Virginia Tech)

  • Tieming Ji

    (University of Missouri)

Abstract

We propose two novel hyper nonlocal priors for variable selection in generalized linear models. To obtain these priors, we first derive two new priors for generalized linear models that combine the Fisher information matrix with the Johnson-Rossell moment and inverse moment priors. We then obtain our hyper nonlocal priors from our nonlocal Fisher information priors by assigning hyperpriors to their scale parameters. As a consequence, the hyper nonlocal priors bring less information on the effect sizes than the Fisher information priors, and thus are very useful in practice whenever the prior knowledge of effect size is lacking. We develop a Laplace integration procedure to compute posterior model probabilities, and we show that under certain regularity conditions the proposed methods are variable selection consistent. We also show that, when compared to local priors, our hyper nonlocal priors lead to faster accumulation of evidence in favor of a true null hypothesis. Simulation studies that consider binomial, Poisson, and negative binomial regression models indicate that our methods select true models with higher success rates than other existing Bayesian methods. Furthermore, the simulation studies show that our methods lead to mean posterior probabilities for the true models that are closer to their empirical success rates. Finally, we illustrate the application of our methods with an analysis of the Pima Indians diabetes dataset.

Suggested Citation

  • Ho-Hsiang Wu & Marco A. R. Ferreira & Mohamed Elkhouly & Tieming Ji, 2020. "Hyper Nonlocal Priors for Variable Selection in Generalized Linear Models," Sankhya A: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 82(1), pages 147-185, February.
  • Handle: RePEc:spr:sankha:v:82:y:2020:i:1:d:10.1007_s13171-018-0151-9
    DOI: 10.1007/s13171-018-0151-9
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    References listed on IDEAS

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    7. David Rossell & Donatello Telesca, 2017. "Nonlocal Priors for High-Dimensional Estimation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(517), pages 254-265, January.
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    9. Andrew Hoegh & Marco A. R. Ferreira & Scotland Leman, 2016. "Spatiotemporal model fusion: multiscale modelling of civil unrest," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 65(4), pages 529-545, August.
    10. Davide Altomare & Guido Consonni & Luca La Rocca, 2013. "Objective Bayesian Search of Gaussian Directed Acyclic Graphical Models for Ordered Variables with Non-Local Priors," Biometrics, The International Biometric Society, vol. 69(2), pages 478-487, June.
    11. Nilotpal Sanyal & Marco A. R. Ferreira, 2017. "Bayesian Wavelet Analysis Using Nonlocal Priors with an Application to fMRI Analysis," Sankhya B: The Indian Journal of Statistics, Springer;Indian Statistical Institute, vol. 79(2), pages 361-388, November.
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    Cited by:

    1. Mark F. J. Steel, 2020. "Model Averaging and Its Use in Economics," Journal of Economic Literature, American Economic Association, vol. 58(3), pages 644-719, September.

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