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Accelerated failure time models for recurrent event data analysis and joint modeling

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  • Shahedul A. Khan

    (University of Saskatchewan)

  • Nyla Basharat

    (University of Saskatchewan)

Abstract

There are two commonly encountered problems in survival analysis: (a) recurrent event data analysis, where an individual may experience an event multiple times over follow-up; and (b) joint modeling, where the event time distribution depends on a longitudinally measured internal covariate. The proportional hazards (PH) family offers an attractive modeling paradigm for recurrent event data analysis and joint modeling. Although there are well-known techniques to test the PH assumption for standard survival data analysis, checking this assumption for joint modeling has received less attention. An alternative framework involves considering an accelerated failure time (AFT) model, which is particularly useful when the PH assumption fails. Note that there are AFT models that can describe data with wide ranging characteristics but have received far less attention in modeling recurrent event data and joint analysis of time-to-event and longitudinal data. In this paper, we develop methodology to analyze these types of data using the AFT family of distributions. Fitting these models is computationally and numerically much more demanding compared to standard survival data analysis. In particular, fitting a joint model is a computationally intensive task as it requires to approximate multiple integrals that do not have an analytic solution except in very special cases. We propose computational algorithms for statistical inference, and develop a software package to fit these models. The proposed methodology is demonstrated using both simulated and real data.

Suggested Citation

  • Shahedul A. Khan & Nyla Basharat, 2022. "Accelerated failure time models for recurrent event data analysis and joint modeling," Computational Statistics, Springer, vol. 37(4), pages 1569-1597, September.
  • Handle: RePEc:spr:compst:v:37:y:2022:i:4:d:10.1007_s00180-021-01171-7
    DOI: 10.1007/s00180-021-01171-7
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    References listed on IDEAS

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    1. Gongjun Xu & Sy Han Chiou & Chiung-Yu Huang & Mei-Cheng Wang & Jun Yan, 2017. "Joint Scale-Change Models for Recurrent Events and Failure Time," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(518), pages 794-805, April.
    2. Fushing Hsieh & Yi-Kuan Tseng & Jane-Ling Wang, 2006. "Joint Modeling of Survival and Longitudinal Data: Likelihood Approach Revisited," Biometrics, The International Biometric Society, vol. 62(4), pages 1037-1043, December.
    3. Robert M. Elashoff & Gang Li & Ning Li, 2008. "A Joint Model for Longitudinal Measurements and Survival Data in the Presence of Multiple Failure Types," Biometrics, The International Biometric Society, vol. 64(3), pages 762-771, September.
    4. Qing Cai & Mei‐Cheng Wang & Kwun Chuen Gary Chan, 2017. "Joint modeling of longitudinal, recurrent events and failure time data for survivor's population," Biometrics, The International Biometric Society, vol. 73(4), pages 1150-1160, December.
    5. Guo X. & Carlin B.P., 2004. "Separate and Joint Modeling of Longitudinal and Event Time Data Using Standard Computer Packages," The American Statistician, American Statistical Association, vol. 58, pages 16-24, February.
    6. Yijian Huang & Limin Peng, 2009. "Accelerated Recurrence Time Models," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 36(4), pages 636-648, December.
    7. Yueh-Yun Chi & Joseph G. Ibrahim, 2006. "Joint Models for Multivariate Longitudinal and Multivariate Survival Data," Biometrics, The International Biometric Society, vol. 62(2), pages 432-445, June.
    8. Yi-Kuan Tseng & Fushing Hsieh & Jane-Ling Wang, 2005. "Joint modelling of accelerated failure time and longitudinal data," Biometrika, Biometrika Trust, vol. 92(3), pages 587-603, September.
    9. Chen, Ming-Hui & Ibrahim, Joseph G. & Sinha, Debajyoti, 2004. "A new joint model for longitudinal and survival data with a cure fraction," Journal of Multivariate Analysis, Elsevier, vol. 91(1), pages 18-34, October.
    10. Dimitris Rizopoulos & Laura A. Hatfield & Bradley P. Carlin & Johanna J. M. Takkenberg, 2014. "Combining Dynamic Predictions From Joint Models for Longitudinal and Time-to-Event Data Using Bayesian Model Averaging," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(508), pages 1385-1397, December.
    11. L. Wu & W. Liu & X. J. Hu, 2010. "Joint Inference on HIV Viral Dynamics and Immune Suppression in Presence of Measurement Errors," Biometrics, The International Biometric Society, vol. 66(2), pages 327-335, June.
    12. Rizopoulos, Dimitris, 2010. "JM: An R Package for the Joint Modelling of Longitudinal and Time-to-Event Data," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 35(i09).
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    2. Adam Braima S. Mastor & Abdulaziz S. Alghamdi & Oscar Ngesa & Joseph Mung’atu & Christophe Chesneau & Ahmed Z. Afify, 2023. "The Extended Exponential-Weibull Accelerated Failure Time Model with Application to Sudan COVID-19 Data," Mathematics, MDPI, vol. 11(2), pages 1-26, January.

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