LPEseq: Local-Pooled-Error Test for RNA Sequencing Experiments with a Small Number of Replicates
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DOI: 10.1371/journal.pone.0159182
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- Stephen B. Montgomery & Micha Sammeth & Maria Gutierrez-Arcelus & Radoslaw P. Lach & Catherine Ingle & James Nisbett & Roderic Guigo & Emmanouil T. Dermitzakis, 2010. "Transcriptome genetics using second generation sequencing in a Caucasian population," Nature, Nature, vol. 464(7289), pages 773-777, April.
- Di Yanming & Schafer Daniel W & Cumbie Jason S & Chang Jeff H, 2011. "The NBP Negative Binomial Model for Assessing Differential Gene Expression from RNA-Seq," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-28, May.
- Arne Henningsen & Ott Toomet, 2011. "maxLik: A package for maximum likelihood estimation in R," Computational Statistics, Springer, vol. 26(3), pages 443-458, September.
- Christopher A. Maher & Chandan Kumar-Sinha & Xuhong Cao & Shanker Kalyana-Sundaram & Bo Han & Xiaojun Jing & Lee Sam & Terrence Barrette & Nallasivam Palanisamy & Arul M. Chinnaiyan, 2009. "Transcriptome sequencing to detect gene fusions in cancer," Nature, Nature, vol. 458(7234), pages 97-101, March.
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