A Self-Organized Model for Cell-Differentiation Based on Variations of Molecular Decay Rates
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0036679
Download full text from publisher
References listed on IDEAS
- Hiroaki Kitano, 2002. "Computational systems biology," Nature, Nature, vol. 420(6912), pages 206-210, November.
- Robert P. Zinzen & Charles Girardot & Julien Gagneur & Martina Braun & Eileen E. M. Furlong, 2009. "Combinatorial binding predicts spatio-temporal cis-regulatory activity," Nature, Nature, vol. 462(7269), pages 65-70, November.
- Jason Gertz & Eric D. Siggia & Barak A. Cohen, 2009. "Analysis of combinatorial cis-regulation in synthetic and genomic promoters," Nature, Nature, vol. 457(7226), pages 215-218, January.
- Björn Schwanhäusser & Dorothea Busse & Na Li & Gunnar Dittmar & Johannes Schuchhardt & Jana Wolf & Wei Chen & Matthias Selbach, 2011. "Global quantification of mammalian gene expression control," Nature, Nature, vol. 473(7347), pages 337-342, May.
- Axel Visel & Matthew J. Blow & Zirong Li & Tao Zhang & Jennifer A. Akiyama & Amy Holt & Ingrid Plajzer-Frick & Malak Shoukry & Crystal Wright & Feng Chen & Veena Afzal & Bing Ren & Edward M. Rubin & L, 2009. "ChIP-seq accurately predicts tissue-specific activity of enhancers," Nature, Nature, vol. 457(7231), pages 854-858, February.
- Nicholas M. Luscombe & M. Madan Babu & Haiyuan Yu & Michael Snyder & Sarah A. Teichmann & Mark Gerstein, 2004. "Genomic analysis of regulatory network dynamics reveals large topological changes," Nature, Nature, vol. 431(7006), pages 308-312, September.
- Anne-Claude Gavin & Patrick Aloy & Paola Grandi & Roland Krause & Markus Boesche & Martina Marzioch & Christina Rau & Lars Juhl Jensen & Sonja Bastuck & Birgit Dümpelfeld & Angela Edelmann & Marie-Ann, 2006. "Proteome survey reveals modularity of the yeast cell machinery," Nature, Nature, vol. 440(7084), pages 631-636, March.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Ji Min Lee & Henrik M. Hammarén & Mikhail M. Savitski & Sung Hee Baek, 2023. "Control of protein stability by post-translational modifications," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
- Mohammad Soltani & Cesar A Vargas-Garcia & Duarte Antunes & Abhyudai Singh, 2016. "Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes," PLOS Computational Biology, Public Library of Science, vol. 12(8), pages 1-23, August.
- Samuel Bandara & Johannes P Schlöder & Roland Eils & Hans Georg Bock & Tobias Meyer, 2009. "Optimal Experimental Design for Parameter Estimation of a Cell Signaling Model," PLOS Computational Biology, Public Library of Science, vol. 5(11), pages 1-12, November.
- Jasjot Singh & Hadeer Elhabashy & Pathma Muthukottiappan & Markus Stepath & Martin Eisenacher & Oliver Kohlbacher & Volkmar Gieselmann & Dominic Winter, 2022. "Cross-linking of the endolysosomal system reveals potential flotillin structures and cargo," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
- Yuping Chen & Jo-Hsi Huang & Connie Phong & James E. Ferrell, 2024. "Viscosity-dependent control of protein synthesis and degradation," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
- Gábor Csárdi & Alexander Franks & David S Choi & Edoardo M Airoldi & D Allan Drummond, 2015. "Accounting for Experimental Noise Reveals That mRNA Levels, Amplified by Post-Transcriptional Processes, Largely Determine Steady-State Protein Levels in Yeast," PLOS Genetics, Public Library of Science, vol. 11(5), pages 1-32, May.
- Du-Hwa Lee & Ho-Seok Lee & Min-Soo Choi & Katarzyna Parys & Kaori Honda & Yasumitsu Kondoh & Jung-Min Lee & Natalie Edelbacher & Geon Heo & Balaji Enugutti & Hiroyuki Osada & Ken Shirasu & Youssef Bel, 2024. "Reprogramming of flagellin receptor responses with surrogate ligands," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
- Yan Li & Chen Xu & Bing Wang & Fujiang Xu & Fahan Ma & Yuanyuan Qu & Dongxian Jiang & Kai Li & Jinwen Feng & Sha Tian & Xiaohui Wu & Yunzhi Wang & Yang Liu & Zhaoyu Qin & Yalan Liu & Jing Qin & Qi Son, 2022. "Proteomic characterization of gastric cancer response to chemotherapy and targeted therapy reveals potential therapeutic strategies," Nature Communications, Nature, vol. 13(1), pages 1-26, December.
- Patrick W Sheppard & Xiaoyun Sun & Mustafa Khammash & Rona G Giffard, 2014. "Overexpression of Heat Shock Protein 72 Attenuates NF-κB Activation Using a Combination of Regulatory Mechanisms in Microglia," PLOS Computational Biology, Public Library of Science, vol. 10(2), pages 1-14, February.
- Michael Römer & Johannes Eichner & Andreas Dräger & Clemens Wrzodek & Finja Wrzodek & Andreas Zell, 2016. "ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis," PLOS ONE, Public Library of Science, vol. 11(2), pages 1-15, February.
- Mark Read & Paul S. Andrews & Jon Timmis & Vipin Kumar, 2011. "Techniques for grounding agent-based simulations in the real domain: a case study in experimental autoimmune encephalomyelitis," Mathematical and Computer Modelling of Dynamical Systems, Taylor & Francis Journals, vol. 18(1), pages 67-86, May.
- Tomáš Helikar & Christine E Cutucache & Lauren M Dahlquist & Tyler A Herek & Joshua J Larson & Jim A Rogers, 2015. "Integrating Interactive Computational Modeling in Biology Curricula," PLOS Computational Biology, Public Library of Science, vol. 11(3), pages 1-9, March.
- Andrew Gordon Wilson & David A. Knowles & Zoubin Ghahramani, 2011. "Gaussian Process Regression Networks," Papers 1110.4411, arXiv.org.
- Chandra, Yanto & Wilkinson, Ian F., 2017. "Firm internationalization from a network-centric complex-systems perspective," Journal of World Business, Elsevier, vol. 52(5), pages 691-701.
- Jacobo Ayensa-Jiménez & Marina Pérez-Aliacar & Teodora Randelovic & José Antonio Sanz-Herrera & Mohamed H. Doweidar & Manuel Doblaré, 2020. "Analysis of the Parametric Correlation in Mathematical Modeling of In Vitro Glioblastoma Evolution Using Copulas," Mathematics, MDPI, vol. 9(1), pages 1-22, December.
- Qing-Ju Jiao & Yan-Kai Zhang & Lu-Ning Li & Hong-Bin Shen, 2011. "BinTree Seeking: A Novel Approach to Mine Both Bi-Sparse and Cohesive Modules in Protein Interaction Networks," PLOS ONE, Public Library of Science, vol. 6(11), pages 1-12, November.
- Tom C Freeman & Leon Goldovsky & Markus Brosch & Stijn van Dongen & Pierre Mazière & Russell J Grocock & Shiri Freilich & Janet Thornton & Anton J Enright, 2007. "Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data," PLOS Computational Biology, Public Library of Science, vol. 3(10), pages 1-11, October.
- Yuksel Bayraktar & Esme Isik & Ibrahim Isik & Ayfer Ozyilmaz & Metin Toprak & Fatma Kahraman Guloglu & Serdar Aydin, 2022. "Analyzing of Alzheimer’s Disease Based on Biomedical and Socio-Economic Approach Using Molecular Communication, Artificial Neural Network, and Random Forest Models," Sustainability, MDPI, vol. 14(13), pages 1-15, June.
- Kaslik, Eva & Rădulescu, Ileana Rodica, 2022. "Stability and bifurcations in fractional-order gene regulatory networks," Applied Mathematics and Computation, Elsevier, vol. 421(C).
- Suran Kim & Sungjin Min & Yi Sun Choi & Sung-Hyun Jo & Jae Hun Jung & Kyusun Han & Jin Kim & Soohwan An & Yong Woo Ji & Yun-Gon Kim & Seung-Woo Cho, 2022. "Tissue extracellular matrix hydrogels as alternatives to Matrigel for culturing gastrointestinal organoids," Nature Communications, Nature, vol. 13(1), pages 1-21, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0036679. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.