TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pone.0030361
Download full text from publisher
References listed on IDEAS
- Mridul K Kalita & Umesh K Nandal & Ansuman Pattnaik & Anandhan Sivalingam & Gowthaman Ramasamy & Manish Kumar & Gajendra P S Raghava & Dinesh Gupta, 2008. "CyclinPred: A SVM-Based Method for Predicting Cyclin Protein Sequences," PLOS ONE, Public Library of Science, vol. 3(7), pages 1-12, July.
- Avner Schlessinger & Marco Punta & Guy Yachdav & Laszlo Kajan & Burkhard Rost, 2009. "Improved Disorder Prediction by Combination of Orthogonal Approaches," PLOS ONE, Public Library of Science, vol. 4(2), pages 1-10, February.
- Yanay Ofran & Burkhard Rost, 2007. "Protein–Protein Interaction Hotspots Carved into Sequences," PLOS Computational Biology, Public Library of Science, vol. 3(7), pages 1-8, July.
- Sitao Wu & Yang Zhang, 2008. "ANGLOR: A Composite Machine-Learning Algorithm for Protein Backbone Torsion Angle Prediction," PLOS ONE, Public Library of Science, vol. 3(10), pages 1-8, October.
- Avner Schlessinger & Jinfeng Liu & Burkhard Rost, 2007. "Natively Unstructured Loops Differ from Other Loops," PLOS Computational Biology, Public Library of Science, vol. 3(7), pages 1-12, July.
- Jiangning Song & Hao Tan & Khalid Mahmood & Ruby H P Law & Ashley M Buckle & Geoffrey I Webb & Tatsuya Akutsu & James C Whisstock, 2009. "Prodepth: Predict Residue Depth by Support Vector Regression Approach from Protein Sequences Only," PLOS ONE, Public Library of Science, vol. 4(9), pages 1-14, September.
Citations
Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
Cited by:
- Cheng Zheng & Mingjun Wang & Kazuhiro Takemoto & Tatsuya Akutsu & Ziding Zhang & Jiangning Song, 2012. "An Integrative Computational Framework Based on a Two-Step Random Forest Algorithm Improves Prediction of Zinc-Binding Sites in Proteins," PLOS ONE, Public Library of Science, vol. 7(11), pages 1-15, November.
- Ivan Kalev & Michael Habeck, 2013. "Confidence-Guided Local Structure Prediction with HHfrag," PLOS ONE, Public Library of Science, vol. 8(10), pages 1-7, October.
- Harinder Singh & Sandeep Singh & Gajendra P S Raghava, 2014. "Evaluation of Protein Dihedral Angle Prediction Methods," PLOS ONE, Public Library of Science, vol. 9(8), pages 1-9, August.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Jiangning Song & Hao Tan & Andrew J Perry & Tatsuya Akutsu & Geoffrey I Webb & James C Whisstock & Robert N Pike, 2012. "PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites," PLOS ONE, Public Library of Science, vol. 7(11), pages 1-23, November.
- Esmeralda Vicedo & Avner Schlessinger & Burkhard Rost, 2015. "Environmental Pressure May Change the Composition Protein Disorder in Prokaryotes," PLOS ONE, Public Library of Science, vol. 10(8), pages 1-21, August.
- Ngaam J Cheung & Wookyung Yu, 2018. "De novo protein structure prediction using ultra-fast molecular dynamics simulation," PLOS ONE, Public Library of Science, vol. 13(11), pages 1-17, November.
- Ivan Kalev & Michael Habeck, 2013. "Confidence-Guided Local Structure Prediction with HHfrag," PLOS ONE, Public Library of Science, vol. 8(10), pages 1-7, October.
- Avner Schlessinger & Marco Punta & Guy Yachdav & Laszlo Kajan & Burkhard Rost, 2009. "Improved Disorder Prediction by Combination of Orthogonal Approaches," PLOS ONE, Public Library of Science, vol. 4(2), pages 1-10, February.
- Rudi Agius & Mieczyslaw Torchala & Iain H Moal & Juan Fernández-Recio & Paul A Bates, 2013. "Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization," PLOS Computational Biology, Public Library of Science, vol. 9(9), pages 1-27, September.
- John A Capra & Roman A Laskowski & Janet M Thornton & Mona Singh & Thomas A Funkhouser, 2009. "Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure," PLOS Computational Biology, Public Library of Science, vol. 5(12), pages 1-18, December.
- Chittibabu Guda & Brian R King & Lipika R Pal & Purnima Guda, 2009. "A Top-Down Approach to Infer and Compare Domain-Domain Interactions across Eight Model Organisms," PLOS ONE, Public Library of Science, vol. 4(3), pages 1-15, March.
- Zhiheng Wang & Qianqian Yang & Tonghua Li & Peisheng Cong, 2015. "DisoMCS: Accurately Predicting Protein Intrinsically Disordered Regions Using a Multi-Class Conservative Score Approach," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-16, June.
- Mahdi Sarmady & William Dampier & Aydin Tozeren, 2011. "Sequence- and Interactome-Based Prediction of Viral Protein Hotspots Targeting Host Proteins: A Case Study for HIV Nef," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-11, June.
- Shohreh Ariaeenejad & Maryam Mousivand & Parinaz Moradi Dezfouli & Maryam Hashemi & Kaveh Kavousi & Ghasem Hosseini Salekdeh, 2018. "A computational method for prediction of xylanase enzymes activity in strains of Bacillus subtilis based on pseudo amino acid composition features," PLOS ONE, Public Library of Science, vol. 13(10), pages 1-16, October.
- Sanjana Sudarshan & Sasi B Kodathala & Amruta C Mahadik & Isha Mehta & Brian W Beck, 2014. "Protein-Protein Interface Detection Using the Energy Centrality Relationship (ECR) Characteristic of Proteins," PLOS ONE, Public Library of Science, vol. 9(5), pages 1-13, May.
- Harinder Singh & Sandeep Singh & Gajendra P S Raghava, 2014. "Evaluation of Protein Dihedral Angle Prediction Methods," PLOS ONE, Public Library of Science, vol. 9(8), pages 1-9, August.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pone00:0030361. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: plosone (email available below). General contact details of provider: https://journals.plos.org/plosone/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.