Protein–Protein Interaction Hotspots Carved into Sequences
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Abstract
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DOI: 10.1371/journal.pcbi.0030119
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References listed on IDEAS
- Peter D. Kwong & Richard Wyatt & James Robinson & Raymond W. Sweet & Joseph Sodroski & Wayne A. Hendrickson, 1998. "Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody," Nature, Nature, vol. 393(6686), pages 648-659, June.
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- John A Capra & Roman A Laskowski & Janet M Thornton & Mona Singh & Thomas A Funkhouser, 2009. "Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure," PLOS Computational Biology, Public Library of Science, vol. 5(12), pages 1-18, December.
- Chittibabu Guda & Brian R King & Lipika R Pal & Purnima Guda, 2009. "A Top-Down Approach to Infer and Compare Domain-Domain Interactions across Eight Model Organisms," PLOS ONE, Public Library of Science, vol. 4(3), pages 1-15, March.
- Mahdi Sarmady & William Dampier & Aydin Tozeren, 2011. "Sequence- and Interactome-Based Prediction of Viral Protein Hotspots Targeting Host Proteins: A Case Study for HIV Nef," PLOS ONE, Public Library of Science, vol. 6(6), pages 1-11, June.
- Rudi Agius & Mieczyslaw Torchala & Iain H Moal & Juan Fernández-Recio & Paul A Bates, 2013. "Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization," PLOS Computational Biology, Public Library of Science, vol. 9(9), pages 1-27, September.
- Jiangning Song & Hao Tan & Andrew J Perry & Tatsuya Akutsu & Geoffrey I Webb & James C Whisstock & Robert N Pike, 2012. "PROSPER: An Integrated Feature-Based Tool for Predicting Protease Substrate Cleavage Sites," PLOS ONE, Public Library of Science, vol. 7(11), pages 1-23, November.
- Jiangning Song & Hao Tan & Mingjun Wang & Geoffrey I Webb & Tatsuya Akutsu, 2012. "TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences," PLOS ONE, Public Library of Science, vol. 7(2), pages 1-16, February.
- Sanjana Sudarshan & Sasi B Kodathala & Amruta C Mahadik & Isha Mehta & Brian W Beck, 2014. "Protein-Protein Interface Detection Using the Energy Centrality Relationship (ECR) Characteristic of Proteins," PLOS ONE, Public Library of Science, vol. 9(5), pages 1-13, May.
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