Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic Selection in Elite, Tropical Rice Breeding Lines
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DOI: 10.1371/journal.pgen.1004982
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- Aditi Bhandari & Jérôme Bartholomé & Tuong-Vi Cao-Hamadoun & Nilima Kumari & Julien Frouin & Arvind Kumar & Nourollah Ahmadi, 2019. "Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice," PLOS ONE, Public Library of Science, vol. 14(5), pages 1-21, May.
- Marco Scutari & Ian Mackay & David Balding, 2016. "Using Genetic Distance to Infer the Accuracy of Genomic Prediction," PLOS Genetics, Public Library of Science, vol. 12(9), pages 1-19, September.
- Laviola, Bruno Galvêas & Rodrigues, Erina Vitório & Teodoro, Paulo Eduardo & Peixoto, Leonardo de Azevedo & Bhering, Leonardo Lopes, 2017. "Biometric and biotechnology strategies in Jatropha genetic breeding for biodiesel production," Renewable and Sustainable Energy Reviews, Elsevier, vol. 76(C), pages 894-904.
- Yusuke Toda & Hitomi Wakatsuki & Toru Aoike & Hiromi Kajiya-Kanegae & Masanori Yamasaki & Takuma Yoshioka & Kaworu Ebana & Takeshi Hayashi & Hiroshi Nakagawa & Toshihiro Hasegawa & Hiroyoshi Iwata, 2020. "Predicting biomass of rice with intermediate traits: Modeling method combining crop growth models and genomic prediction models," PLOS ONE, Public Library of Science, vol. 15(6), pages 1-21, June.
- Ramin Rayee & Hoang-Dung Tran & Tran Dang Xuan & Tran Dang Khanh, 2018. "Imposed Water Deficit after Anthesis for the Improvement of Macronutrients, Quality, Phytochemicals, and Antioxidants in Rice Grain," Sustainability, MDPI, vol. 10(12), pages 1-12, December.
- Charles‐Elie Rabier & Simona Grusea, 2021. "Prediction in high‐dimensional linear models and application to genomic selection under imperfect linkage disequilibrium," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 70(4), pages 1001-1026, August.
- Md. S. Islam & Per McCord & Quentin D. Read & Lifang Qin & Alexander E. Lipka & Sushma Sood & James Todd & Marcus Olatoye, 2022. "Accuracy of Genomic Prediction of Yield and Sugar Traits in Saccharum spp. Hybrids," Agriculture, MDPI, vol. 12(9), pages 1-22, September.
- Muhammad Junaid Zaghum & Kashir Ali & Sheng Teng, 2022. "Integrated Genetic and Omics Approaches for the Regulation of Nutritional Activities in Rice ( Oryza sativa L.)," Agriculture, MDPI, vol. 12(11), pages 1-17, October.
- Shin-Fu Tsai & Chih-Chien Shen & Chen-Tuo Liao, 2021. "Bayesian Optimization Approaches for Identifying the Best Genotype from a Candidate Population," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 26(4), pages 519-537, December.
- Cécile Grenier & Tuong-Vi Cao & Yolima Ospina & Constanza Quintero & Marc Henri Châtel & Joe Tohme & Brigitte Courtois & Nourollah Ahmadi, 2015. "Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding," PLOS ONE, Public Library of Science, vol. 10(8), pages 1-25, August.
- Shiori Yabe & Masanori Yamasaki & Kaworu Ebana & Takeshi Hayashi & Hiroyoshi Iwata, 2016. "Island-Model Genomic Selection for Long-Term Genetic Improvement of Autogamous Crops," PLOS ONE, Public Library of Science, vol. 11(4), pages 1-21, April.
- Julien Frouin & Axel Labeyrie & Arnaud Boisnard & Gian Attilio Sacchi & Nourollah Ahmadi, 2019. "Genomic prediction offers the most effective marker assisted breeding approach for ability to prevent arsenic accumulation in rice grains," PLOS ONE, Public Library of Science, vol. 14(6), pages 1-22, June.
- Charles-Elie Rabier & Philippe Barre & Torben Asp & Gilles Charmet & Brigitte Mangin, 2016. "On the Accuracy of Genomic Selection," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-23, June.
- Prabin Bajgain & James A. Anderson, 2021. "Multi-Allelic Haplotype-Based Association Analysis Identifies Genomic Regions Controlling Domestication Traits in Intermediate Wheatgrass," Agriculture, MDPI, vol. 11(7), pages 1-15, July.
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