Accuracy of Genomic Prediction of Yield and Sugar Traits in Saccharum spp. Hybrids
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- Andrew H. Paterson & John E. Bowers & Rémy Bruggmann & Inna Dubchak & Jane Grimwood & Heidrun Gundlach & Georg Haberer & Uffe Hellsten & Therese Mitros & Alexander Poliakov & Jeremy Schmutz & Manuel S, 2009. "The Sorghum bicolor genome and the diversification of grasses," Nature, Nature, vol. 457(7229), pages 551-556, January.
- Giovanny Covarrubias-Pazaran, 2016. "Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-15, June.
- Nicolas Heslot & Jessica Rutkoski & Jesse Poland & Jean-Luc Jannink & Mark E Sorrells, 2013. "Impact of Marker Ascertainment Bias on Genomic Selection Accuracy and Estimates of Genetic Diversity," PLOS ONE, Public Library of Science, vol. 8(9), pages 1-8, September.
- Jennifer Spindel & Hasina Begum & Deniz Akdemir & Parminder Virk & Bertrand Collard & Edilberto Redoña & Gary Atlin & Jean-Luc Jannink & Susan R McCouch, 2015. "Genomic Selection and Association Mapping in Rice (Oryza sativa): Effect of Trait Genetic Architecture, Training Population Composition, Marker Number and Statistical Model on Accuracy of Rice Genomic," PLOS Genetics, Public Library of Science, vol. 11(2), pages 1-25, February.
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Keywords
genomic selection; prediction accuracy; Saccharum spp. hybrid; sugar and yield trait; sugarcane;All these keywords.
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