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Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data

Author

Listed:
  • Krystyna Nadachowska-Brzyska
  • Reto Burri
  • Pall I Olason
  • Takeshi Kawakami
  • Linnéa Smeds
  • Hans Ellegren

Abstract

Profound knowledge of demographic history is a prerequisite for the understanding and inference of processes involved in the evolution of population differentiation and speciation. Together with new coalescent-based methods, the recent availability of genome-wide data enables investigation of differentiation and divergence processes at unprecedented depth. We combined two powerful approaches, full Approximate Bayesian Computation analysis (ABC) and pairwise sequentially Markovian coalescent modeling (PSMC), to reconstruct the demographic history of the split between two avian speciation model species, the pied flycatcher and collared flycatcher. Using whole-genome re-sequencing data from 20 individuals, we investigated 15 demographic models including different levels and patterns of gene flow, and changes in effective population size over time. ABC provided high support for recent (mode 0.3 my, range

Suggested Citation

  • Krystyna Nadachowska-Brzyska & Reto Burri & Pall I Olason & Takeshi Kawakami & Linnéa Smeds & Hans Ellegren, 2013. "Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data," PLOS Genetics, Public Library of Science, vol. 9(11), pages 1-14, November.
    • Handle: RePEc:plo:pgen00:1003942
    DOI: 10.1371/journal.pgen.1003942
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    References listed on IDEAS

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    1. Hans Ellegren & Linnéa Smeds & Reto Burri & Pall I. Olason & Niclas Backström & Takeshi Kawakami & Axel Künstner & Hannu Mäkinen & Krystyna Nadachowska-Brzyska & Anna Qvarnström & Severin Uebbing & Jo, 2012. "The genomic landscape of species divergence in Ficedula flycatchers," Nature, Nature, vol. 491(7426), pages 756-760, November.
    2. Heng Li & Richard Durbin, 2011. "Inference of human population history from individual whole-genome sequences," Nature, Nature, vol. 475(7357), pages 493-496, July.
    3. Thor Veen & Thomas Borge & Simon C. Griffith & Glenn-Peter Saetre & Stanislav Bures & Lars Gustafsson & Ben C. Sheldon, 2001. "Hybridization and adaptive mate choice in flycatchers," Nature, Nature, vol. 411(6833), pages 45-50, May.
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