Multi-scale approaches for high-speed imaging and analysis of large neural populations
Author
Abstract
Suggested Citation
DOI: 10.1371/journal.pcbi.1005685
Download full text from publisher
References listed on IDEAS
- Jingu Kim & Yunlong He & Haesun Park, 2014. "Algorithms for nonnegative matrix and tensor factorizations: a unified view based on block coordinate descent framework," Journal of Global Optimization, Springer, vol. 58(2), pages 285-319, February.
- Daniel Soudry & Suraj Keshri & Patrick Stinson & Min-hwan Oh & Garud Iyengar & Liam Paninski, 2015. "Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data," PLOS Computational Biology, Public Library of Science, vol. 11(10), pages 1-30, October.
- GILLIS, Nicolas & GLINEUR, François, 2010.
"A multilevel approach for nonnegative matrix factorization,"
LIDAM Discussion Papers CORE
2010047, Université catholique de Louvain, Center for Operations Research and Econometrics (CORE).
- GILLIS, Nicolas & GLINEUR, François, 2011. "A multilevel approach for nonnegative matrix factorization," LIDAM Reprints CORE 2381, Université catholique de Louvain, Center for Operations Research and Econometrics (CORE).
- Johannes Friedrich & Pengcheng Zhou & Liam Paninski, 2017. "Fast online deconvolution of calcium imaging data," PLOS Computational Biology, Public Library of Science, vol. 13(3), pages 1-26, March.
- Misha B. Ahrens & Jennifer M. Li & Michael B. Orger & Drew N. Robson & Alexander F. Schier & Florian Engert & Ruben Portugues, 2012. "Brain-wide neuronal dynamics during motor adaptation in zebrafish," Nature, Nature, vol. 485(7399), pages 471-477, May.
- Tsai-Wen Chen & Trevor J. Wardill & Yi Sun & Stefan R. Pulver & Sabine L. Renninger & Amy Baohan & Eric R. Schreiter & Rex A. Kerr & Michael B. Orger & Vivek Jayaraman & Loren L. Looger & Karel Svobod, 2013. "Ultrasensitive fluorescent proteins for imaging neuronal activity," Nature, Nature, vol. 499(7458), pages 295-300, July.
Most related items
These are the items that most often cite the same works as this one and are cited by the same works as this one.- Philipp Berens & Jeremy Freeman & Thomas Deneux & Nikolay Chenkov & Thomas McColgan & Artur Speiser & Jakob H Macke & Srinivas C Turaga & Patrick Mineault & Peter Rupprecht & Stephan Gerhard & Rainer , 2018. "Community-based benchmarking improves spike rate inference from two-photon calcium imaging data," PLOS Computational Biology, Public Library of Science, vol. 14(5), pages 1-13, May.
- Jeffrey P Nguyen & Ashley N Linder & George S Plummer & Joshua W Shaevitz & Andrew M Leifer, 2017. "Automatically tracking neurons in a moving and deforming brain," PLOS Computational Biology, Public Library of Science, vol. 13(5), pages 1-19, May.
- Rundong Du & Barry Drake & Haesun Park, 2019. "Hybrid clustering based on content and connection structure using joint nonnegative matrix factorization," Journal of Global Optimization, Springer, vol. 74(4), pages 861-877, August.
- Takehiro Sano & Tsuyoshi Migita & Norikazu Takahashi, 2022. "A novel update rule of HALS algorithm for nonnegative matrix factorization and Zangwill’s global convergence," Journal of Global Optimization, Springer, vol. 84(3), pages 755-781, November.
- Celia M. Gagliardi & Marc E. Normandin & Alexandra T. Keinath & Joshua B. Julian & Matthew R. Lopez & Manuel-Miguel Ramos-Alvarez & Russell A. Epstein & Isabel A. Muzzio, 2024. "Distinct neural mechanisms for heading retrieval and context recognition in the hippocampus during spatial reorientation," Nature Communications, Nature, vol. 15(1), pages 1-22, December.
- Andrej Čopar & Blaž Zupan & Marinka Zitnik, 2019. "Fast optimization of non-negative matrix tri-factorization," PLOS ONE, Public Library of Science, vol. 14(6), pages 1-15, June.
- Johannes Friedrich & Pengcheng Zhou & Liam Paninski, 2017. "Fast online deconvolution of calcium imaging data," PLOS Computational Biology, Public Library of Science, vol. 13(3), pages 1-26, March.
- Daniel U Campos-Delgado & Omar Gutierrez-Navarro & Ricardo Salinas-Martinez & Elvis Duran & Aldo R Mejia-Rodriguez & Miguel J Velazquez-Duran & Javier A Jo, 2021. "Blind deconvolution estimation by multi-exponential models and alternated least squares approximations: Free-form and sparse approach," PLOS ONE, Public Library of Science, vol. 16(3), pages 1-29, March.
- Omer Mano & Damon A Clark, 2017. "Graphics Processing Unit-Accelerated Code for Computing Second-Order Wiener Kernels and Spike-Triggered Covariance," PLOS ONE, Public Library of Science, vol. 12(1), pages 1-11, January.
- Yang Qi, 2018. "A Very Brief Introduction to Nonnegative Tensors from the Geometric Viewpoint," Mathematics, MDPI, vol. 6(11), pages 1-19, October.
- Rundong Du & Da Kuang & Barry Drake & Haesun Park, 2017. "DC-NMF: nonnegative matrix factorization based on divide-and-conquer for fast clustering and topic modeling," Journal of Global Optimization, Springer, vol. 68(4), pages 777-798, August.
- Zengpeng Han & Nengsong Luo & Wenyu Ma & Xiaodong Liu & Yuxiang Cai & Jiaxin Kou & Jie Wang & Lei Li & Siqi Peng & Zihong Xu & Wen Zhang & Yuxiang Qiu & Yang Wu & Chaohui Ye & Kunzhang Lin & Fuqiang X, 2023. "AAV11 enables efficient retrograde targeting of projection neurons and enhances astrocyte-directed transduction," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
- Jingu Kim & Yunlong He & Haesun Park, 2014. "Algorithms for nonnegative matrix and tensor factorizations: a unified view based on block coordinate descent framework," Journal of Global Optimization, Springer, vol. 58(2), pages 285-319, February.
- Daniel M. Virga & Stevie Hamilton & Bertha Osei & Abigail Morgan & Parker Kneis & Emiliano Zamponi & Natalie J. Park & Victoria L. Hewitt & David Zhang & Kevin C. Gonzalez & Fiona M. Russell & D. Grah, 2024. "Activity-dependent compartmentalization of dendritic mitochondria morphology through local regulation of fusion-fission balance in neurons in vivo," Nature Communications, Nature, vol. 15(1), pages 1-21, December.
- Jilt Sebastian & Mriganka Sur & Hema A Murthy & Mathew Magimai-Doss, 2021. "Signal-to-signal neural networks for improved spike estimation from calcium imaging data," PLOS Computational Biology, Public Library of Science, vol. 17(3), pages 1-19, March.
- Gillis, Nicolas & Glineur, François & Tuyttens, Daniel & Vandaele, Arnaud, 2015.
"Heuristics for exact nonnegative matrix factorization,"
LIDAM Discussion Papers CORE
2015006, Université catholique de Louvain, Center for Operations Research and Econometrics (CORE).
- VANDAELE, Arnaud & GILLIS, Nicolas & GLINEUR, François & TUYTTENS, Daniel, 2016. "Heuristics for Exact Nonnegative Matrix Factorization," LIDAM Reprints CORE 2737, Université catholique de Louvain, Center for Operations Research and Econometrics (CORE).
- Jina Yun & Simon Hansen & Otto Morris & David T. Madden & Clare Peters Libeu & Arjun J. Kumar & Cameron Wehrfritz & Aaron H. Nile & Yingnan Zhang & Lijuan Zhou & Yuxin Liang & Zora Modrusan & Michelle, 2023. "Senescent cells perturb intestinal stem cell differentiation through Ptk7 induced noncanonical Wnt and YAP signaling," Nature Communications, Nature, vol. 14(1), pages 1-19, December.
- Shinichiro Kira & Houman Safaai & Ari S. Morcos & Stefano Panzeri & Christopher D. Harvey, 2023. "A distributed and efficient population code of mixed selectivity neurons for flexible navigation decisions," Nature Communications, Nature, vol. 14(1), pages 1-28, December.
- Lloyd E. Russell & Mehmet Fişek & Zidan Yang & Lynn Pei Tan & Adam M. Packer & Henry W. P. Dalgleish & Selmaan N. Chettih & Christopher D. Harvey & Michael Häusser, 2024. "The influence of cortical activity on perception depends on behavioral state and sensory context," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
- Teppei Matsui & Takayuki Hashimoto & Tomonari Murakami & Masato Uemura & Kohei Kikuta & Toshiki Kato & Kenichi Ohki, 2024. "Orthogonalization of spontaneous and stimulus-driven activity by hierarchical neocortical areal network in primates," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
Corrections
All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:plo:pcbi00:1005685. See general information about how to correct material in RePEc.
If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.
If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .
If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.
For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ploscompbiol (email available below). General contact details of provider: https://journals.plos.org/ploscompbiol/ .
Please note that corrections may take a couple of weeks to filter through the various RePEc services.