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When do correlations increase with firing rates in recurrent networks?

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  • Andrea K Barreiro
  • Cheng Ly

Abstract

A central question in neuroscience is to understand how noisy firing patterns are used to transmit information. Because neural spiking is noisy, spiking patterns are often quantified via pairwise correlations, or the probability that two cells will spike coincidentally, above and beyond their baseline firing rate. One observation frequently made in experiments, is that correlations can increase systematically with firing rate. Theoretical studies have determined that stimulus-dependent correlations that increase with firing rate can have beneficial effects on information coding; however, we still have an incomplete understanding of what circuit mechanisms do, or do not, produce this correlation-firing rate relationship. Here, we studied the relationship between pairwise correlations and firing rates in recurrently coupled excitatory-inhibitory spiking networks with conductance-based synapses. We found that with stronger excitatory coupling, a positive relationship emerged between pairwise correlations and firing rates. To explain these findings, we used linear response theory to predict the full correlation matrix and to decompose correlations in terms of graph motifs. We then used this decomposition to explain why covariation of correlations with firing rate—a relationship previously explained in feedforward networks driven by correlated input—emerges in some recurrent networks but not in others. Furthermore, when correlations covary with firing rate, this relationship is reflected in low-rank structure in the correlation matrix.Author summary: A central question in neuroscience is to understand how noisy firing patterns are used to transmit information. We quantify spiking patterns by using pairwise correlations, or the probability that two cells will spike coincidentally, above and beyond their baseline firing rate. One observation frequently made in experiments is that correlations can increase systematically with firing rate. Recent studies of a type of output cell in mouse retina found this relationship; furthermore, they determined that the increase of correlation with firing rate helped the cells encode information, provided the correlations were stimulus-dependent. Several theoretical studies have explored this basic structure, and found that it is generally beneficial to modulate correlations in this way. However—aside from mouse retinal cells referenced here—we do not yet have many examples of real neural circuits that show this correlation-firing rate pattern, so we do not know what common features (or mechanisms) might occur between them.

Suggested Citation

  • Andrea K Barreiro & Cheng Ly, 2017. "When do correlations increase with firing rates in recurrent networks?," PLOS Computational Biology, Public Library of Science, vol. 13(4), pages 1-30, April.
  • Handle: RePEc:plo:pcbi00:1005506
    DOI: 10.1371/journal.pcbi.1005506
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    References listed on IDEAS

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    1. Rava Azeredo da Silveira & Michael J Berry II, 2014. "High-Fidelity Coding with Correlated Neurons," PLOS Computational Biology, Public Library of Science, vol. 10(11), pages 1-25, November.
    2. Volker Pernice & Benjamin Staude & Stefano Cardanobile & Stefan Rotter, 2011. "How Structure Determines Correlations in Neuronal Networks," PLOS Computational Biology, Public Library of Science, vol. 7(5), pages 1-14, May.
    3. Dimitri Yatsenko & Krešimir Josić & Alexander S Ecker & Emmanouil Froudarakis & R James Cotton & Andreas S Tolias, 2015. "Improved Estimation and Interpretation of Correlations in Neural Circuits," PLOS Computational Biology, Public Library of Science, vol. 11(3), pages 1-28, March.
    4. Paul M Harrison & Laurent Badel & Mark J Wall & Magnus J E Richardson, 2015. "Experimentally Verified Parameter Sets for Modelling Heterogeneous Neocortical Pyramidal-Cell Populations," PLOS Computational Biology, Public Library of Science, vol. 11(8), pages 1-23, August.
    5. James Trousdale & Yu Hu & Eric Shea-Brown & Krešimir Josić, 2012. "Impact of Network Structure and Cellular Response on Spike Time Correlations," PLOS Computational Biology, Public Library of Science, vol. 8(3), pages 1-15, March.
    6. Jaime de la Rocha & Brent Doiron & Eric Shea-Brown & Krešimir Josić & Alex Reyes, 2007. "Correlation between neural spike trains increases with firing rate," Nature, Nature, vol. 448(7155), pages 802-806, August.
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    Cited by:

    1. Michelle F Craft & Andrea K Barreiro & Shree Hari Gautam & Woodrow L Shew & Cheng Ly, 2021. "Differences in olfactory bulb mitral cell spiking with ortho- and retronasal stimulation revealed by data-driven models," PLOS Computational Biology, Public Library of Science, vol. 17(9), pages 1-28, September.
    2. Volker Pernice & Rava Azeredo da Silveira, 2018. "Interpretation of correlated neural variability from models of feed-forward and recurrent circuits," PLOS Computational Biology, Public Library of Science, vol. 14(2), pages 1-26, February.
    3. Andrea K Barreiro & Shree Hari Gautam & Woodrow L Shew & Cheng Ly, 2017. "A theoretical framework for analyzing coupled neuronal networks: Application to the olfactory system," PLOS Computational Biology, Public Library of Science, vol. 13(10), pages 1-37, October.

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