SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent
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DOI: 10.1371/journal.pcbi.1005130
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References listed on IDEAS
- Nicola De Maio & Chieh-Hsi Wu & Kathleen M O’Reilly & Daniel Wilson, 2015. "New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation," PLOS Genetics, Public Library of Science, vol. 11(8), pages 1-22, August.
- Erik M Volz & Simon D W Frost, 2013. "Inferring the Source of Transmission with Phylogenetic Data," PLOS Computational Biology, Public Library of Science, vol. 9(12), pages 1-13, December.
- Matthew Hall & Mark Woolhouse & Andrew Rambaut, 2015. "Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set," PLOS Computational Biology, Public Library of Science, vol. 11(12), pages 1-36, December.
- Marco J Morelli & Gaël Thébaud & Joël Chadœuf & Donald P King & Daniel T Haydon & Samuel Soubeyrand, 2012. "A Bayesian Inference Framework to Reconstruct Transmission Trees Using Epidemiological and Genetic Data," PLOS Computational Biology, Public Library of Science, vol. 8(11), pages 1-14, November.
- Remco Bouckaert & Joseph Heled & Denise Kühnert & Tim Vaughan & Chieh-Hsi Wu & Dong Xie & Marc A Suchard & Andrew Rambaut & Alexei J Drummond, 2014. "BEAST 2: A Software Platform for Bayesian Evolutionary Analysis," PLOS Computational Biology, Public Library of Science, vol. 10(4), pages 1-6, April.
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