A Bayesian Inference Framework to Reconstruct Transmission Trees Using Epidemiological and Genetic Data
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DOI: 10.1371/journal.pcbi.1002768
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References listed on IDEAS
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- Max S Y Lau & Gavin J Gibson & Hola Adrakey & Amanda McClelland & Steven Riley & Jon Zelner & George Streftaris & Sebastian Funk & Jessica Metcalf & Benjamin D Dalziel & Bryan T Grenfell, 2017. "A mechanistic spatio-temporal framework for modelling individual-to-individual transmission—With an application to the 2014-2015 West Africa Ebola outbreak," PLOS Computational Biology, Public Library of Science, vol. 13(10), pages 1-18, October.
- Matthew Hall & Mark Woolhouse & Andrew Rambaut, 2015. "Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set," PLOS Computational Biology, Public Library of Science, vol. 11(12), pages 1-36, December.
- Montazeri Hesam & Little Susan & Mozaffarilegha Mozhgan & Beerenwinkel Niko & DeGruttola Victor, 2020. "Bayesian reconstruction of transmission trees from genetic sequences and uncertain infection times," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 19(4-6), pages 1-13, December.
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