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Approximate low-rank factorization with structured factors

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  • Markovsky, Ivan
  • Niranjan, Mahesan

Abstract

An approximate rank revealing factorization problem with structure constraints on the normalized factors is considered. Examples of structure, motivated by an application in microarray data analysis, are sparsity, nonnegativity, periodicity, and smoothness. In general, the approximate rank revealing factorization problem is nonconvex. An alternating projections algorithm is developed, which is globally convergent to a locally optimal solution. Although the algorithm is developed for a specific application in microarray data analysis, the approach is applicable to other types of structures.

Suggested Citation

  • Markovsky, Ivan & Niranjan, Mahesan, 2010. "Approximate low-rank factorization with structured factors," Computational Statistics & Data Analysis, Elsevier, vol. 54(12), pages 3411-3420, December.
    • Handle: RePEc:eee:csdana:v:54:y:2010:i:12:p:3411-3420
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    References listed on IDEAS

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    1. Daniel D. Lee & H. Sebastian Seung, 1999. "Learning the parts of objects by non-negative matrix factorization," Nature, Nature, vol. 401(6755), pages 788-791, October.
    2. Krijnen, Wim P., 2006. "Convergence of the sequence of parameters generated by alternating least squares algorithms," Computational Statistics & Data Analysis, Elsevier, vol. 51(2), pages 481-489, November.
    3. Kiers, Henk A. L., 2002. "Setting up alternating least squares and iterative majorization algorithms for solving various matrix optimization problems," Computational Statistics & Data Analysis, Elsevier, vol. 41(1), pages 157-170, November.
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    Cited by:

    1. GILLIS, Nicolas & GLINEUR, François, 2010. "Low-rank matrix approximation with weights or missing data is NP-hard," LIDAM Discussion Papers CORE 2010075, Université catholique de Louvain, Center for Operations Research and Econometrics (CORE).

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