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Potently neutralizing and protective human antibodies against SARS-CoV-2

Author

Listed:
  • Seth J. Zost

    (Vanderbilt University Medical Center)

  • Pavlo Gilchuk

    (Vanderbilt University Medical Center)

  • James Brett Case

    (Washington University School of Medicine)

  • Elad Binshtein

    (Vanderbilt University Medical Center)

  • Rita E. Chen

    (Washington University School of Medicine
    Washington University School of Medicine)

  • Joseph P. Nkolola

    (Harvard Medical School)

  • Alexandra Schäfer

    (University of North Carolina at Chapel Hill)

  • Joseph X. Reidy

    (Vanderbilt University Medical Center)

  • Andrew Trivette

    (Vanderbilt University Medical Center)

  • Rachel S. Nargi

    (Vanderbilt University Medical Center)

  • Rachel E. Sutton

    (Vanderbilt University Medical Center)

  • Naveenchandra Suryadevara

    (Vanderbilt University Medical Center)

  • David R. Martinez

    (University of North Carolina at Chapel Hill)

  • Lauren E. Williamson

    (Vanderbilt University Medical Center)

  • Elaine C. Chen

    (Vanderbilt University Medical Center)

  • Taylor Jones

    (Vanderbilt University Medical Center)

  • Samuel Day

    (Vanderbilt University Medical Center)

  • Luke Myers

    (Vanderbilt University Medical Center)

  • Ahmed O. Hassan

    (Washington University School of Medicine)

  • Natasha M. Kafai

    (Washington University School of Medicine
    Washington University School of Medicine)

  • Emma S. Winkler

    (Washington University School of Medicine
    Washington University School of Medicine)

  • Julie M. Fox

    (Washington University School of Medicine)

  • Swathi Shrihari

    (Washington University School of Medicine)

  • Benjamin K. Mueller

    (Vanderbilt University)

  • Jens Meiler

    (Vanderbilt University
    Leipzig University Medical School, Institute for Drug Discovery)

  • Abishek Chandrashekar

    (Harvard Medical School)

  • Noe B. Mercado

    (Harvard Medical School)

  • James J. Steinhardt

    (Antibody Discovery and Protein Engineering, BioPharmaceuticals R&D, AstraZeneca)

  • Kuishu Ren

    (Microbial Sciences, BioPharmaceuticals R&D, AstraZeneca)

  • Yueh-Ming Loo

    (Microbial Sciences, BioPharmaceuticals R&D, AstraZeneca)

  • Nicole L. Kallewaard

    (Microbial Sciences, BioPharmaceuticals R&D, AstraZeneca)

  • Broc T. McCune

    (Washington University School of Medicine)

  • Shamus P. Keeler

    (Washington University School of Medicine
    Washington University School of Medicine)

  • Michael J. Holtzman

    (Washington University School of Medicine
    Washington University School of Medicine)

  • Dan H. Barouch

    (Harvard Medical School)

  • Lisa E. Gralinski

    (University of North Carolina at Chapel Hill)

  • Ralph S. Baric

    (University of North Carolina at Chapel Hill)

  • Larissa B. Thackray

    (Washington University School of Medicine)

  • Michael S. Diamond

    (Washington University School of Medicine
    Washington University School of Medicine
    Washington University School of Medicine
    Washington University School of Medicine)

  • Robert H. Carnahan

    (Vanderbilt University Medical Center
    Vanderbilt University Medical Center)

  • James E. Crowe

    (Vanderbilt University Medical Center
    Vanderbilt University Medical Center
    Vanderbilt University Medical Center)

Abstract

The ongoing pandemic of coronavirus disease 2019 (COVID-19), which is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a major threat to global health1 and the medical countermeasures available so far are limited2,3. Moreover, we currently lack a thorough understanding of the mechanisms of humoral immunity to SARS-CoV-24. Here we analyse a large panel of human monoclonal antibodies that target the spike (S) glycoprotein5, and identify several that exhibit potent neutralizing activity and fully block the receptor-binding domain of the S protein (SRBD) from interacting with human angiotensin-converting enzyme 2 (ACE2). Using competition-binding, structural and functional studies, we show that the monoclonal antibodies can be clustered into classes that recognize distinct epitopes on the SRBD, as well as distinct conformational states of the S trimer. Two potently neutralizing monoclonal antibodies, COV2-2196 and COV2-2130, which recognize non-overlapping sites, bound simultaneously to the S protein and neutralized wild-type SARS-CoV-2 virus in a synergistic manner. In two mouse models of SARS-CoV-2 infection, passive transfer of COV2-2196, COV2-2130 or a combination of both of these antibodies protected mice from weight loss and reduced the viral burden and levels of inflammation in the lungs. In addition, passive transfer of either of two of the most potent ACE2-blocking monoclonal antibodies (COV2-2196 or COV2-2381) as monotherapy protected rhesus macaques from SARS-CoV-2 infection. These results identify protective epitopes on the SRBD and provide a structure-based framework for rational vaccine design and the selection of robust immunotherapeutic agents.

Suggested Citation

  • Seth J. Zost & Pavlo Gilchuk & James Brett Case & Elad Binshtein & Rita E. Chen & Joseph P. Nkolola & Alexandra Schäfer & Joseph X. Reidy & Andrew Trivette & Rachel S. Nargi & Rachel E. Sutton & Navee, 2020. "Potently neutralizing and protective human antibodies against SARS-CoV-2," Nature, Nature, vol. 584(7821), pages 443-449, August.
  • Handle: RePEc:nat:nature:v:584:y:2020:i:7821:d:10.1038_s41586-020-2548-6
    DOI: 10.1038/s41586-020-2548-6
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    3. Omar Nyabi & Mostafa Bentahir & Jérôme Ambroise & Bertrand Bearzatto & Nawfal Chibani & Benjamin Smits & Jean François Durant & Aleksandr Vybornov & Olivier Thellin & Benaissa El Moualij & Jean-Luc Ga, 2021. "Diagnostic Value of IgM and IgG Detection in COVID-19 Diagnosis by the Mobile Laboratory B-LiFE: A Massive Testing Strategy in the Piedmont Region," IJERPH, MDPI, vol. 18(7), pages 1-10, March.
    4. Yu Guo & Guangshun Zhang & Qi Yang & Xiaowei Xie & Yang Lu & Xuelian Cheng & Hui Wang & Jingxi Liang & Jielin Tang & Yuxin Gao & Hang Shang & Jun Dai & Yongxia Shi & Jiaxi Zhou & Jun Zhou & Hangtian G, 2023. "Discovery and characterization of potent pan-variant SARS-CoV-2 neutralizing antibodies from individuals with Omicron breakthrough infection," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
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    6. Elizabeth M. Parzych & Jianqiu Du & Ali R. Ali & Katherine Schultheis & Drew Frase & Trevor R. F. Smith & Jiayan Cui & Neethu Chokkalingam & Nicholas J. Tursi & Viviane M. Andrade & Bryce M. Warner & , 2022. "DNA-delivered antibody cocktail exhibits improved pharmacokinetics and confers prophylactic protection against SARS-CoV-2," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    7. James Brett Case & Samantha Mackin & John M. Errico & Zhenlu Chong & Emily A. Madden & Bradley Whitener & Barbara Guarino & Michael A. Schmid & Kim Rosenthal & Kuishu Ren & Ha V. Dang & Gyorgy Snell &, 2022. "Resilience of S309 and AZD7442 monoclonal antibody treatments against infection by SARS-CoV-2 Omicron lineage strains," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    8. Tingting Li & Xiaojian Han & Chenjian Gu & Hangtian Guo & Huajun Zhang & Yingming Wang & Chao Hu & Kai Wang & Fengjiang Liu & Feiyang Luo & Yanan Zhang & Jie Hu & Wang Wang & Shenglong Li & Yanan Hao , 2021. "Potent SARS-CoV-2 neutralizing antibodies with protective efficacy against newly emerged mutational variants," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    9. Fulvio Lauretani & Marco Salvi & Irene Zucchini & Crescenzo Testa & Chiara Cattabiani & Arianna Arisi & Marcello Maggio, 2023. "Relationship between Vitamin D and Immunity in Older People with COVID-19," IJERPH, MDPI, vol. 20(8), pages 1-19, April.
    10. Yanqun Wang & An Yan & Deyong Song & Maoqin Duan & Chuangchuang Dong & Jiantao Chen & Zihe Jiang & Yuanzhu Gao & Muding Rao & Jianxia Feng & Zhaoyong Zhang & Ruxi Qi & Xiaomin Ma & Hong Liu & Beibei Y, 2024. "Identification of a highly conserved neutralizing epitope within the RBD region of diverse SARS-CoV-2 variants," Nature Communications, Nature, vol. 15(1), pages 1-15, December.
    11. Kevin J. Kramer & Erin M. Wilfong & Kelsey Voss & Sierra M. Barone & Andrea R. Shiakolas & Nagarajan Raju & Caroline E. Roe & Naveenchandra Suryadevara & Lauren M. Walker & Steven C. Wall & Ariana Pau, 2022. "Single-cell profiling of the antigen-specific response to BNT162b2 SARS-CoV-2 RNA vaccine," Nature Communications, Nature, vol. 13(1), pages 1-20, December.
    12. Thierry Bihan & Teresa Nunez de Villavicencio Diaz & Chelsea Reitzel & Victoria Lange & Minyoung Park & Emma Beadle & Lin Wu & Marko Jovic & Rosalin M. Dubois & Amber L. Couzens & Jin Duan & Xiaobing , 2024. "De novo protein sequencing of antibodies for identification of neutralizing antibodies in human plasma post SARS-CoV-2 vaccination," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    13. Sheng Wang, 2023. "Can Digital Financial Behavior Improve the Effect of Prevention and Control of COVID-19 in China?," Global Journal of Health Science, Canadian Center of Science and Education, vol. 15(5), pages 1-11, May.
    14. Wenkai Han & Ningning Chen & Xinzhou Xu & Adil Sahil & Juexiao Zhou & Zhongxiao Li & Huawen Zhong & Elva Gao & Ruochi Zhang & Yu Wang & Shiwei Sun & Peter Pak-Hang Cheung & Xin Gao, 2023. "Predicting the antigenic evolution of SARS-COV-2 with deep learning," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    15. Chang Liu & Raksha Das & Aiste Dijokaite-Guraliuc & Daming Zhou & Alexander J. Mentzer & Piyada Supasa & Muneeswaran Selvaraj & Helen M. E. Duyvesteyn & Thomas G. Ritter & Nigel Temperton & Paul Klene, 2024. "Emerging variants develop total escape from potent monoclonal antibodies induced by BA.4/5 infection," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    16. Daming Zhou & Piyada Supasa & Chang Liu & Aiste Dijokaite-Guraliuc & Helen M. E. Duyvesteyn & Muneeswaran Selvaraj & Alexander J. Mentzer & Raksha Das & Wanwisa Dejnirattisai & Nigel Temperton & Paul , 2024. "The SARS-CoV-2 neutralizing antibody response to SD1 and its evasion by BA.2.86," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    17. Lei Peng & Yingxia Hu & Madeleine C. Mankowski & Ping Ren & Rita E. Chen & Jin Wei & Min Zhao & Tongqing Li & Therese Tripler & Lupeng Ye & Ryan D. Chow & Zhenhao Fang & Chunxiang Wu & Matthew B. Dong, 2022. "Monospecific and bispecific monoclonal SARS-CoV-2 neutralizing antibodies that maintain potency against B.1.617," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
    18. Pauline Maisonnasse & Yoann Aldon & Aurélien Marc & Romain Marlin & Nathalie Dereuddre-Bosquet & Natalia A. Kuzmina & Alec W. Freyn & Jonne L. Snitselaar & Antonio Gonçalves & Tom G. Caniels & Judith , 2021. "COVA1-18 neutralizing antibody protects against SARS-CoV-2 in three preclinical models," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
    19. Emanuele Andreano & Ida Paciello & Giulio Pierleoni & Giuseppe Maccari & Giada Antonelli & Valentina Abbiento & Piero Pileri & Linda Benincasa & Ginevra Giglioli & Giulia Piccini & Concetta De Santi &, 2023. "mRNA vaccines and hybrid immunity use different B cell germlines against Omicron BA.4 and BA.5," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    20. Daniel N. Streblow & Alec J. Hirsch & Jeffrey J. Stanton & Anne D. Lewis & Lois Colgin & Ann J. Hessell & Craig N. Kreklywich & Jessica L. Smith & William F. Sutton & David Chauvin & Jennifer Woo & Be, 2023. "Aerosol delivery of SARS-CoV-2 human monoclonal antibodies in macaques limits viral replication and lung pathology," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    21. Sean Harrington & Jacob Pyche & Andrew R. Burns & Tina Spalholz & Kaetlyn T. Ryan & Rachel J. Baker & Justin Ching & Lucien Rufener & Mark Lautens & Daniel Kulke & Alexandre Vernudachi & Mostafa Zaman, 2023. "Nemacol is a small molecule inhibitor of C. elegans vesicular acetylcholine transporter with anthelmintic potential," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    22. Andrew C. Hunt & Bastian Vögeli & Ahmed O. Hassan & Laura Guerrero & Weston Kightlinger & Danielle J. Yoesep & Antje Krüger & Madison DeWinter & Michael S. Diamond & Ashty S. Karim & Michael C. Jewett, 2023. "A rapid cell-free expression and screening platform for antibody discovery," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    23. Ting Lu & Rui Ma & Wenjuan Dong & Kun-Yu Teng & Daniel S. Kollath & Zhiyao Li & Jinhee Yi & Christian Bustillos & Shoubao Ma & Lei Tian & Anthony G. Mansour & Zhenlong Li & Erik W. Settles & Jianying , 2022. "Off-the-shelf CAR natural killer cells secreting IL-15 target spike in treating COVID-19," Nature Communications, Nature, vol. 13(1), pages 1-11, December.

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