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Mesoscale neuronal granular trial variability in vivo illustrated by nonlinear recurrent network in silico

Author

Listed:
  • Guihua Xiao

    (Tsinghua University
    Tsinghua University
    Tsinghua University)

  • Yeyi Cai

    (Tsinghua University
    Tsinghua University)

  • Yuanlong Zhang

    (Tsinghua University
    Tsinghua University)

  • Jingyu Xie

    (Tsinghua University
    Tsinghua University)

  • Lifan Wu

    (Tsinghua University
    Tsinghua University)

  • Hao Xie

    (Tsinghua University
    Tsinghua University)

  • Jiamin Wu

    (Tsinghua University
    Tsinghua University
    Tsinghua University
    Tsinghua University)

  • Qionghai Dai

    (Tsinghua University
    Tsinghua University
    Tsinghua University
    Tsinghua University)

Abstract

Large-scale neural recording with single-neuron resolution has revealed the functional complexity of the neural systems. However, even under well-designed task conditions, the cortex-wide network exhibits highly dynamic trial variability, posing challenges to the conventional trial-averaged analysis. To study mesoscale trial variability, we conducted a comparative study between fluorescence imaging of layer-2/3 neurons in vivo and network simulation in silico. We imaged up to 40,000 cortical neurons’ triggered responses by deep brain stimulus (DBS). And we build an in silico network to reproduce the biological phenomena we observed in vivo. We proved the existence of ineluctable trial variability and found it influenced by input amplitude and range. Moreover, we demonstrated that a spatially heterogeneous coding community accounts for more reliable inter-trial coding despite single-unit trial variability. A deeper understanding of trial variability from the perspective of a dynamical system may lead to uncovering intellectual abilities such as parallel coding and creativity.

Suggested Citation

  • Guihua Xiao & Yeyi Cai & Yuanlong Zhang & Jingyu Xie & Lifan Wu & Hao Xie & Jiamin Wu & Qionghai Dai, 2024. "Mesoscale neuronal granular trial variability in vivo illustrated by nonlinear recurrent network in silico," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-54346-3
    DOI: 10.1038/s41467-024-54346-3
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    as
    1. Satoru K. Miura & Massimo Scanziani, 2022. "Publisher Correction: Distinguishing externally from saccade-induced motion in visual cortex," Nature, Nature, vol. 611(7934), pages 5-5, November.
    2. Satoru K. Miura & Massimo Scanziani, 2022. "Distinguishing externally from saccade-induced motion in visual cortex," Nature, Nature, vol. 610(7930), pages 135-142, October.
    3. Patrick T. Sadtler & Kristin M. Quick & Matthew D. Golub & Steven M. Chase & Stephen I. Ryu & Elizabeth C. Tyler-Kabara & Byron M. Yu & Aaron P. Batista, 2014. "Neural constraints on learning," Nature, Nature, vol. 512(7515), pages 423-426, August.
    4. Hiroaki Norimoto & Lorenz A. Fenk & Hsing-Hsi Li & Maria Antonietta Tosches & Tatiana Gallego-Flores & David Hain & Sam Reiter & Riho Kobayashi & Angeles Macias & Anja Arends & Michaela Klinkmann & Gi, 2020. "A claustrum in reptiles and its role in slow-wave sleep," Nature, Nature, vol. 578(7795), pages 413-418, February.
    5. Valerio Mante & David Sussillo & Krishna V. Shenoy & William T. Newsome, 2013. "Context-dependent computation by recurrent dynamics in prefrontal cortex," Nature, Nature, vol. 503(7474), pages 78-84, November.
    6. Nanditha Rajamani & Helen Friedrich & Konstantin Butenko & Till Dembek & Florian Lange & Pavel Navrátil & Patricia Zvarova & Barbara Hollunder & Rob M. A. de Bie & Vincent J. J. Odekerken & Jens Volkm, 2024. "Author Correction: Deep brain stimulation of symptom-specific networks in Parkinson’s disease," Nature Communications, Nature, vol. 15(1), pages 1-4, December.
    7. Nicholas A. Steinmetz & Peter Zatka-Haas & Matteo Carandini & Kenneth D. Harris, 2019. "Distributed coding of choice, action and engagement across the mouse brain," Nature, Nature, vol. 576(7786), pages 266-273, December.
    8. Steffen Schneider & Jin Hwa Lee & Mackenzie Weygandt Mathis, 2023. "Learnable latent embeddings for joint behavioural and neural analysis," Nature, Nature, vol. 617(7960), pages 360-368, May.
    9. Meng Wang & Xiang Liao & Ruijie Li & Shanshan Liang & Ran Ding & Jingcheng Li & Jianxiong Zhang & Wenjing He & Ke Liu & Junxia Pan & Zhikai Zhao & Tong Li & Kuan Zhang & Xingyi Li & Jing Lyu & Zhenqia, 2020. "Single-neuron representation of learned complex sounds in the auditory cortex," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    10. Nakul Yadav & Chelsea Noble & James E. Niemeyer & Andrea Terceros & Jonathan Victor & Conor Liston & Priyamvada Rajasethupathy, 2022. "Prefrontal feature representations drive memory recall," Nature, Nature, vol. 608(7921), pages 153-160, August.
    11. Eric Lowet & Krishnakanth Kondabolu & Samuel Zhou & Rebecca A. Mount & Yangyang Wang & Cara R. Ravasio & Xue Han, 2022. "Deep brain stimulation creates informational lesion through membrane depolarization in mouse hippocampus," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    12. Nanditha Rajamani & Helen Friedrich & Konstantin Butenko & Till Dembek & Florian Lange & Pavel Navrátil & Patricia Zvarova & Barbara Hollunder & Rob M. A. de Bie & Vincent J. J. Odekerken & Jens Volkm, 2024. "Deep brain stimulation of symptom-specific networks in Parkinson’s disease," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
    13. Hidehiko K. Inagaki & Lorenzo Fontolan & Sandro Romani & Karel Svoboda, 2019. "Discrete attractor dynamics underlies persistent activity in the frontal cortex," Nature, Nature, vol. 566(7743), pages 212-217, February.
    14. Takashi Yoshida & Kenichi Ohki, 2020. "Natural images are reliably represented by sparse and variable populations of neurons in visual cortex," Nature Communications, Nature, vol. 11(1), pages 1-19, December.
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