IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-51666-2.html
   My bibliography  Save this article

Identifying the multiple drivers of cactus diversification

Author

Listed:
  • Jamie B. Thompson

    (Reading
    University of Bath)

  • Tania Hernández-Hernández

    (Desert Botanical Garden)

  • Georgia Keeling

    (University of Bath)

  • Marilyn Vásquez-Cruz

    (Tecnológico Nacional de México)

  • Nicholas K. Priest

    (University of Bath)

Abstract

Our understanding of the complexity of forces at play in the rise of major angiosperm lineages remains incomplete. The diversity and heterogeneous distribution of most angiosperm lineages is so extraordinary that it confounds our ability to identify simple drivers of diversification. Using machine learning in combination with phylogenetic modelling, we show that five separate abiotic and biotic variables significantly contribute to the diversification of Cactaceae. We reconstruct a comprehensive phylogeny, build a dataset of 39 abiotic and biotic variables, and predict the variables of central importance, while accounting for potential interactions between those variables. We use state-dependent diversification models to confirm that five abiotic and biotic variables shape diversification in the cactus family. Of highest importance are diurnal air temperature range, soil sand content and plant size, with lesser importance identified in isothermality and geographic range size. Interestingly, each of the estimated optimal conditions for abiotic variables were intermediate, indicating that cactus diversification is promoted by moderate, not extreme, climates. Our results reveal the potential primary drivers of cactus diversification, and the need to account for the complexity underlying the evolution of angiosperm lineages.

Suggested Citation

  • Jamie B. Thompson & Tania Hernández-Hernández & Georgia Keeling & Marilyn Vásquez-Cruz & Nicholas K. Priest, 2024. "Identifying the multiple drivers of cactus diversification," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-51666-2
    DOI: 10.1038/s41467-024-51666-2
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-51666-2
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-51666-2?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Stilianos Louca & Matthew W. Pennell, 2020. "Extant timetrees are consistent with a myriad of diversification histories," Nature, Nature, vol. 580(7804), pages 502-505, April.
    2. Daniel L. Rabosky & Jonathan Chang & Pascal O. Title & Peter F. Cowman & Lauren Sallan & Matt Friedman & Kristin Kaschner & Cristina Garilao & Thomas J. Near & Marta Coll & Michael E. Alfaro, 2018. "An inverse latitudinal gradient in speciation rate for marine fishes," Nature, Nature, vol. 559(7714), pages 392-395, July.
    3. Alexandre C. Siqueira & Renato A. Morais & David R. Bellwood & Peter F. Cowman, 2020. "Trophic innovations fuel reef fish diversification," Nature Communications, Nature, vol. 11(1), pages 1-11, December.
    4. W. Jetz & G. H. Thomas & J. B. Joy & K. Hartmann & A. O. Mooers, 2012. "The global diversity of birds in space and time," Nature, Nature, vol. 491(7424), pages 444-448, November.
    5. Charles R. Harris & K. Jarrod Millman & Stéfan J. Walt & Ralf Gommers & Pauli Virtanen & David Cournapeau & Eric Wieser & Julian Taylor & Sebastian Berg & Nathaniel J. Smith & Robert Kern & Matti Picu, 2020. "Array programming with NumPy," Nature, Nature, vol. 585(7825), pages 357-362, September.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Felipe O. Cerezer & Cristian S. Dambros & Marco T. P. Coelho & Fernanda A. S. Cassemiro & Elisa Barreto & James S. Albert & Rafael O. Wüest & Catherine H. Graham, 2023. "Accelerated body size evolution in upland environments is correlated with recent speciation in South American freshwater fishes," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    2. Dimitar Dimitrov & Xiaoting Xu & Xiangyan Su & Nawal Shrestha & Yunpeng Liu & Jonathan D. Kennedy & Lisha Lyu & David Nogués-Bravo & James Rosindell & Yong Yang & Jon Fjeldså & Jianquan Liu & Bernhard, 2023. "Diversification of flowering plants in space and time," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    3. Sarah T. Friedman & Martha M. Muñoz, 2023. "A latitudinal gradient of deep-sea invasions for marine fishes," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    4. Maxime Policarpo & Maude W. Baldwin & Didier Casane & Walter Salzburger, 2024. "Diversity and evolution of the vertebrate chemoreceptor gene repertoire," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    5. Andrew F Magee & Sebastian Höhna & Tetyana I Vasylyeva & Adam D Leaché & Vladimir N Minin, 2020. "Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts," PLOS Computational Biology, Public Library of Science, vol. 16(10), pages 1-23, October.
    6. Gregory Thom & Marcelo Gehara & Brian Tilston Smith & Cristina Y. Miyaki & Fábio Raposo Amaral, 2021. "Microevolutionary dynamics show tropical valleys are deeper for montane birds of the Atlantic Forest," Nature Communications, Nature, vol. 12(1), pages 1-10, December.
    7. Jan Smyčka & Anna Toszogyova & David Storch, 2023. "The relationship between geographic range size and rates of species diversification," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    8. Joan Garcia-Porta & Daniel Sol & Matt Pennell & Ferran Sayol & Antigoni Kaliontzopoulou & Carlos A. Botero, 2022. "Niche expansion and adaptive divergence in the global radiation of crows and ravens," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    9. Tan Wang & L. Jeff Hong, 2023. "Large-Scale Inventory Optimization: A Recurrent Neural Networks–Inspired Simulation Approach," INFORMS Journal on Computing, INFORMS, vol. 35(1), pages 196-215, January.
    10. Léon Faure & Bastien Mollet & Wolfram Liebermeister & Jean-Loup Faulon, 2023. "A neural-mechanistic hybrid approach improving the predictive power of genome-scale metabolic models," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    11. Claudia Quinteros-Cartaya & Guillermo Solorio-Magaña & Francisco Javier Núñez-Cornú & Felipe de Jesús Escalona-Alcázar & Diana Núñez, 2023. "Microearthquakes in the Guadalajara Metropolitan Zone, Mexico: evidence from buried active faults in Tesistán Valley, Zapopan," Natural Hazards: Journal of the International Society for the Prevention and Mitigation of Natural Hazards, Springer;International Society for the Prevention and Mitigation of Natural Hazards, vol. 116(3), pages 2797-2818, April.
    12. Furqan Dar & Samuel R. Cohen & Diana M. Mitrea & Aaron H. Phillips & Gergely Nagy & Wellington C. Leite & Christopher B. Stanley & Jeong-Mo Choi & Richard W. Kriwacki & Rohit V. Pappu, 2024. "Biomolecular condensates form spatially inhomogeneous network fluids," Nature Communications, Nature, vol. 15(1), pages 1-17, December.
    13. Nina Tiel & Fabian Fopp & Philipp Brun & Johan Hoogen & Dirk Nikolaus Karger & Cecilia M. Casadei & Lisha Lyu & Devis Tuia & Niklaus E. Zimmermann & Thomas W. Crowther & Loïc Pellissier, 2024. "Regional uniqueness of tree species composition and response to forest loss and climate change," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    14. López Pérez, Mario & Mansilla Corona, Ricardo, 2022. "Ordinal synchronization and typical states in high-frequency digital markets," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 598(C).
    15. Jessica M. Vanslambrouck & Sean B. Wilson & Ker Sin Tan & Ella Groenewegen & Rajeev Rudraraju & Jessica Neil & Kynan T. Lawlor & Sophia Mah & Michelle Scurr & Sara E. Howden & Kanta Subbarao & Melissa, 2022. "Enhanced metanephric specification to functional proximal tubule enables toxicity screening and infectious disease modelling in kidney organoids," Nature Communications, Nature, vol. 13(1), pages 1-23, December.
    16. Jianhua Wang & Guan-Zhu Han, 2023. "Genome mining shows that retroviruses are pervasively invading vertebrate genomes," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    17. Kiran Krishnamachari & Dylan Lu & Alexander Swift-Scott & Anuar Yeraliyev & Kayla Lee & Weitai Huang & Sim Ngak Leng & Anders Jacobsen Skanderup, 2022. "Accurate somatic variant detection using weakly supervised deep learning," Nature Communications, Nature, vol. 13(1), pages 1-8, December.
    18. Larissa Samaan & Leonie Klock & Sandra Weber & Mirjam Reidick & Leonie Ascone & Simone Kühn, 2024. "Low-Level Visual Features of Window Views Contribute to Perceived Naturalness and Mental Health Outcomes," IJERPH, MDPI, vol. 21(5), pages 1-35, May.
    19. Dennis Bontempi & Leonard Nuernberg & Suraj Pai & Deepa Krishnaswamy & Vamsi Thiriveedhi & Ahmed Hosny & Raymond H. Mak & Keyvan Farahani & Ron Kikinis & Andrey Fedorov & Hugo J. W. L. Aerts, 2024. "End-to-end reproducible AI pipelines in radiology using the cloud," Nature Communications, Nature, vol. 15(1), pages 1-9, December.
    20. Lauren L. Porter & Allen K. Kim & Swechha Rimal & Loren L. Looger & Ananya Majumdar & Brett D. Mensh & Mary R. Starich & Marie-Paule Strub, 2022. "Many dissimilar NusG protein domains switch between α-helix and β-sheet folds," Nature Communications, Nature, vol. 13(1), pages 1-12, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-51666-2. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.