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Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy

Author

Listed:
  • YiRang Shin

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Matthew R. Lowerison

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Yike Wang

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Xi Chen

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Qi You

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Zhijie Dong

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Mark A. Anastasio

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana-Champaign)

  • Pengfei Song

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana-Champaign)

Abstract

Ultrasound localization microscopy (ULM) enables deep tissue microvascular imaging by localizing and tracking intravenously injected microbubbles circulating in the bloodstream. However, conventional localization techniques require spatially isolated microbubbles, resulting in prolonged imaging time to obtain detailed microvascular maps. Here, we introduce LOcalization with Context Awareness (LOCA)-ULM, a deep learning-based microbubble simulation and localization pipeline designed to enhance localization performance in high microbubble concentrations. In silico, LOCA-ULM enhanced microbubble detection accuracy to 97.8% and reduced the missing rate to 23.8%, outperforming conventional and deep learning-based localization methods up to 17.4% in accuracy and 37.6% in missing rate reduction. In in vivo rat brain imaging, LOCA-ULM revealed dense cerebrovascular networks and spatially adjacent microvessels undetected by conventional ULM. We further demonstrate the superior localization performance of LOCA-ULM in functional ULM (fULM) where LOCA-ULM significantly increased the functional imaging sensitivity of fULM to hemodynamic responses invoked by whisker stimulations in the rat brain.

Suggested Citation

  • YiRang Shin & Matthew R. Lowerison & Yike Wang & Xi Chen & Qi You & Zhijie Dong & Mark A. Anastasio & Pengfei Song, 2024. "Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47154-2
    DOI: 10.1038/s41467-024-47154-2
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    References listed on IDEAS

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    1. Claudia Errico & Juliette Pierre & Sophie Pezet & Yann Desailly & Zsolt Lenkei & Olivier Couture & Mickael Tanter, 2015. "Ultrafast ultrasound localization microscopy for deep super-resolution vascular imaging," Nature, Nature, vol. 527(7579), pages 499-502, November.
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