IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v15y2024i1d10.1038_s41467-024-47154-2.html
   My bibliography  Save this article

Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy

Author

Listed:
  • YiRang Shin

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Matthew R. Lowerison

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Yike Wang

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Xi Chen

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Qi You

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Zhijie Dong

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign)

  • Mark A. Anastasio

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana-Champaign)

  • Pengfei Song

    (University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana–Champaign
    University of Illinois Urbana-Champaign)

Abstract

Ultrasound localization microscopy (ULM) enables deep tissue microvascular imaging by localizing and tracking intravenously injected microbubbles circulating in the bloodstream. However, conventional localization techniques require spatially isolated microbubbles, resulting in prolonged imaging time to obtain detailed microvascular maps. Here, we introduce LOcalization with Context Awareness (LOCA)-ULM, a deep learning-based microbubble simulation and localization pipeline designed to enhance localization performance in high microbubble concentrations. In silico, LOCA-ULM enhanced microbubble detection accuracy to 97.8% and reduced the missing rate to 23.8%, outperforming conventional and deep learning-based localization methods up to 17.4% in accuracy and 37.6% in missing rate reduction. In in vivo rat brain imaging, LOCA-ULM revealed dense cerebrovascular networks and spatially adjacent microvessels undetected by conventional ULM. We further demonstrate the superior localization performance of LOCA-ULM in functional ULM (fULM) where LOCA-ULM significantly increased the functional imaging sensitivity of fULM to hemodynamic responses invoked by whisker stimulations in the rat brain.

Suggested Citation

  • YiRang Shin & Matthew R. Lowerison & Yike Wang & Xi Chen & Qi You & Zhijie Dong & Mark A. Anastasio & Pengfei Song, 2024. "Context-aware deep learning enables high-efficacy localization of high concentration microbubbles for super-resolution ultrasound localization microscopy," Nature Communications, Nature, vol. 15(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47154-2
    DOI: 10.1038/s41467-024-47154-2
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-024-47154-2
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-024-47154-2?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Claudia Errico & Juliette Pierre & Sophie Pezet & Yann Desailly & Zsolt Lenkei & Olivier Couture & Mickael Tanter, 2015. "Ultrafast ultrasound localization microscopy for deep super-resolution vascular imaging," Nature, Nature, vol. 527(7579), pages 499-502, November.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yunmin Yang & Binbin Chu & Jiayi Cheng & Jiali Tang & Bin Song & Houyu Wang & Yao He, 2022. "Bacteria eat nanoprobes for aggregation-enhanced imaging and killing diverse microorganisms," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    2. Yurou Jia & Suying Zhang & Xuan Zhang & Houyou Long & Caibin Xu & Yechao Bai & Ying Cheng & Dajian Wu & Mingxi Deng & Cheng-Wei Qiu & Xiaojun Liu, 2024. "Compact meta-differentiator for achieving isotropically high-contrast ultrasonic imaging," Nature Communications, Nature, vol. 15(1), pages 1-11, December.
    3. Filip Ivanovski & Maja Meško & Tina Lebar & Marko Rupnik & Duško Lainšček & Miha Gradišek & Roman Jerala & Mojca Benčina, 2024. "Ultrasound-mediated spatial and temporal control of engineered cells in vivo," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    4. Xosé Luís Deán-Ben & Justine Robin & Daniil Nozdriukhin & Ruiqing Ni & Jim Zhao & Chaim Glück & Jeanne Droux & Juan Sendón-Lago & Zhenyue Chen & Quanyu Zhou & Bruno Weber & Susanne Wegener & Anxo Vida, 2023. "Deep optoacoustic localization microangiography of ischemic stroke in mice," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    5. Shensheng Zhao & Jonathan Hartanto & Ritin Joseph & Cheng-Hsun Wu & Yang Zhao & Yun-Sheng Chen, 2023. "Hybrid photoacoustic and fast super-resolution ultrasound imaging," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    6. Chung Il Park & Seungah Choe & Woorim Lee & Wonjae Choi & Miso Kim & Hong Min Seung & Yoon Young Kim, 2023. "Ultrasonic barrier-through imaging by Fabry-Perot resonance-tailoring panel," Nature Communications, Nature, vol. 14(1), pages 1-9, December.
    7. Zeng Zhang & Misun Hwang & Todd J. Kilbaugh & Anush Sridharan & Joseph Katz, 2022. "Cerebral microcirculation mapped by echo particle tracking velocimetry quantifies the intracranial pressure and detects ischemia," Nature Communications, Nature, vol. 13(1), pages 1-15, December.
    8. Quanyu Zhou & Zhenyue Chen & Yu-Hang Liu & Mohamad El Amki & Chaim Glück & Jeanne Droux & Michael Reiss & Bruno Weber & Susanne Wegener & Daniel Razansky, 2022. "Three-dimensional wide-field fluorescence microscopy for transcranial mapping of cortical microcirculation," Nature Communications, Nature, vol. 13(1), pages 1-11, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-47154-2. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.