An archetype and scaling of developmental tissue dynamics across species
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DOI: 10.1038/s41467-023-43902-y
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- Joerg A. Fritz & Joseph Brancale & Masayoshi Tokita & Kevin J. Burns & M. Brent Hawkins & Arhat Abzhanov & Michael P. Brenner, 2014. "Shared developmental programme strongly constrains beak shape diversity in songbirds," Nature Communications, Nature, vol. 5(1), pages 1-9, September.
- Bernd Boehm & Henrik Westerberg & Gaja Lesnicar-Pucko & Sahdia Raja & Michael Rautschka & James Cotterell & Jim Swoger & James Sharpe, 2010. "The Role of Spatially Controlled Cell Proliferation in Limb Bud Morphogenesis," PLOS Biology, Public Library of Science, vol. 8(7), pages 1-21, July.
- Anjali Rao & Dalia Barkley & Gustavo S. França & Itai Yanai, 2021. "Exploring tissue architecture using spatial transcriptomics," Nature, Nature, vol. 596(7871), pages 211-220, August.
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